Example #1
0
def test_TrackBedpostxDeter_outputs():
    output_map = dict(tracked=dict(), )
    outputs = TrackBedpostxDeter.output_spec()

    for key, metadata in output_map.items():
        for metakey, value in metadata.items():
            yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_TrackBedpostxDeter_outputs():
    output_map = dict(tracked=dict(),
    )
    outputs = TrackBedpostxDeter.output_spec()

    for key, metadata in output_map.items():
        for metakey, value in metadata.items():
            yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_TrackBedpostxDeter_inputs():
    input_map = dict(anisfile=dict(argstr='-anisfile %s',
    ),
    anisthresh=dict(argstr='-anisthresh %f',
    ),
    args=dict(argstr='%s',
    ),
    bedpostxdir=dict(argstr='-bedpostxdir %s',
    mandatory=True,
    ),
    curveinterval=dict(argstr='-curveinterval %f',
    requires=['curvethresh'],
    ),
    curvethresh=dict(argstr='-curvethresh %f',
    ),
    data_dims=dict(argstr='-datadims %s',
    units='voxels',
    ),
    environ=dict(nohash=True,
    usedefault=True,
    ),
    gzip=dict(argstr='-gzip',
    ),
    ignore_exception=dict(nohash=True,
    usedefault=True,
    ),
    in_file=dict(argstr='-inputfile %s',
    position=1,
    ),
    inputdatatype=dict(argstr='-inputdatatype %s',
    ),
    inputmodel=dict(argstr='-inputmodel %s',
    usedefault=True,
    ),
    interpolator=dict(argstr='-interpolator %s',
    ),
    ipthresh=dict(argstr='-ipthresh %f',
    ),
    maxcomponents=dict(argstr='-maxcomponents %d',
    units='NA',
    ),
    min_vol_frac=dict(argstr='-bedpostxminf %d',
    units='NA',
    ),
    numpds=dict(argstr='-numpds %d',
    units='NA',
    ),
    out_file=dict(argstr='-outputfile %s',
    genfile=True,
    position=-1,
    ),
    output_root=dict(argstr='-outputroot %s',
    position=-1,
    ),
    outputtracts=dict(argstr='-outputtracts %s',
    ),
    seed_file=dict(argstr='-seedfile %s',
    position=2,
    ),
    stepsize=dict(argstr='-stepsize %f',
    requires=['tracker'],
    ),
    terminal_output=dict(nohash=True,
    ),
    tracker=dict(argstr='-tracker %s',
    usedefault=True,
    ),
    voxel_dims=dict(argstr='-voxeldims %s',
    units='mm',
    ),
    )
    inputs = TrackBedpostxDeter.input_spec()

    for key, metadata in input_map.items():
        for metakey, value in metadata.items():
            yield assert_equal, getattr(inputs.traits()[key], metakey), value
Example #4
0
def test_TrackBedpostxDeter_inputs():
    input_map = dict(
        anisfile=dict(argstr='-anisfile %s', ),
        anisthresh=dict(argstr='-anisthresh %f', ),
        args=dict(argstr='%s', ),
        bedpostxdir=dict(
            argstr='-bedpostxdir %s',
            mandatory=True,
        ),
        curveinterval=dict(
            argstr='-curveinterval %f',
            requires=['curvethresh'],
        ),
        curvethresh=dict(argstr='-curvethresh %f', ),
        data_dims=dict(
            argstr='-datadims %s',
            units='voxels',
        ),
        environ=dict(
            nohash=True,
            usedefault=True,
        ),
        gzip=dict(argstr='-gzip', ),
        ignore_exception=dict(
            nohash=True,
            usedefault=True,
        ),
        in_file=dict(
            argstr='-inputfile %s',
            position=1,
        ),
        inputdatatype=dict(argstr='-inputdatatype %s', ),
        inputmodel=dict(
            argstr='-inputmodel %s',
            usedefault=True,
        ),
        interpolator=dict(argstr='-interpolator %s', ),
        ipthresh=dict(argstr='-ipthresh %f', ),
        maxcomponents=dict(
            argstr='-maxcomponents %d',
            units='NA',
        ),
        min_vol_frac=dict(
            argstr='-bedpostxminf %d',
            units='NA',
        ),
        numpds=dict(
            argstr='-numpds %d',
            units='NA',
        ),
        out_file=dict(
            argstr='-outputfile %s',
            genfile=True,
            position=-1,
        ),
        output_root=dict(
            argstr='-outputroot %s',
            position=-1,
        ),
        outputtracts=dict(argstr='-outputtracts %s', ),
        seed_file=dict(
            argstr='-seedfile %s',
            position=2,
        ),
        stepsize=dict(
            argstr='-stepsize %f',
            requires=['tracker'],
        ),
        terminal_output=dict(nohash=True, ),
        tracker=dict(
            argstr='-tracker %s',
            usedefault=True,
        ),
        voxel_dims=dict(
            argstr='-voxeldims %s',
            units='mm',
        ),
    )
    inputs = TrackBedpostxDeter.input_spec()

    for key, metadata in input_map.items():
        for metakey, value in metadata.items():
            yield assert_equal, getattr(inputs.traits()[key], metakey), value