def test_swapdims():
files, testdir, origdir = create_files_in_directory()
swap = fsl.SwapDimensions()
# Test the underlying command
yield assert_equal, swap.cmd, "fslswapdim"
# Test mandatory args
args = [dict(in_file=files[0]), dict(new_dims=("x", "y", "z"))]
for arg in args:
wontrun = fsl.SwapDimensions(**arg)
yield assert_raises, ValueError, wontrun.run
# Now test a basic command line
swap.inputs.in_file = files[0]
swap.inputs.new_dims = ("x", "y", "z")
yield assert_equal, swap.cmdline, "fslswapdim a.nii x y z %s" % os.path.realpath(
os.path.join(testdir, "a_newdims.nii"))
# Test that we can set an output name
swap.inputs.out_file = "b.nii"
yield assert_equal, swap.cmdline, "fslswapdim a.nii x y z b.nii"
# Clean up
clean_directory(testdir, origdir)
def test_swapdims(create_files_in_directory):
files, testdir, out_ext = create_files_in_directory
swap = fsl.SwapDimensions()
# Test the underlying command
assert swap.cmd == "fslswapdim"
# Test mandatory args
args = [dict(in_file=files[0]), dict(new_dims=("x", "y", "z"))]
for arg in args:
wontrun = fsl.SwapDimensions(**arg)
with pytest.raises(ValueError):
wontrun.run()
# Now test a basic command line
swap.inputs.in_file = files[0]
swap.inputs.new_dims = ("x", "y", "z")
assert swap.cmdline == "fslswapdim a.nii x y z %s" % os.path.realpath(
os.path.join(testdir, "a_newdims%s" % out_ext))
# Test that we can set an output name
swap.inputs.out_file = "b.nii"
assert swap.cmdline == "fslswapdim a.nii x y z b.nii"