def fname_presuffix_basename(*args, **kwargs):
import os
import nipype.utils.filemanip as fmanip
if isinstance(args[0], list):
return [
os.path.basename(f)
for f in fmanip.fnames_presuffix(*args, **kwargs)
]
return os.path.basename(fmanip.fname_presuffix(*args, **kwargs))
def _copyfiles_to_wd(self, outdir, execute):
""" copy files over and change the inputs"""
if hasattr(self._interface,'_get_filecopy_info'):
for info in self._interface._get_filecopy_info():
files = self.inputs.get().get(info['key'])
if not isdefined(files):
continue
if files:
infiles = filename_to_list(files)
if execute:
newfiles = copyfiles(infiles, [outdir], copy=info['copy'])
else:
newfiles = fnames_presuffix(infiles, newpath=outdir)
if not isinstance(files, list):
newfiles = list_to_filename(newfiles)
setattr(self.inputs, info['key'], newfiles)
def test_fnames_presuffix():
fnames = ['foo.nii', 'bar.nii']
pths = fnames_presuffix(fnames, 'pre_', '_post', '/tmp')
yield assert_equal, pths, [
'/tmp/pre_foo_post.nii', '/tmp/pre_bar_post.nii'
]
def test_fnames_presuffix():
fnames = ['foo.nii', 'bar.nii']
pths = fnames_presuffix(fnames, 'pre_', '_post', '/tmp')
yield assert_equal, pths, ['/tmp/pre_foo_post.nii', '/tmp/pre_bar_post.nii']
def fname_presuffix_basename(*args,**kwargs):
import os
import nipype.utils.filemanip as fmanip
if isinstance(args[0],list):
return [os.path.basename(f) for f in fmanip.fnames_presuffix(*args,**kwargs)]
return os.path.basename(fmanip.fname_presuffix(*args,**kwargs))
