# Do our own build and install time dependency checking. setup.py gets called in
# many different ways, and may be called just to collect information (egg_info).
# We need to set up tripwires to raise errors when actually doing things, like
# building, rather than unconditionally in the setup.py import or exec
# We may make tripwire versions of build_ext, build_py, install
try:
from nisext.sexts import package_check, get_comrec_build
except ImportError: # No nibabel
msg = ('Need nisext package from nibabel installation'
' - please install nibabel first')
pybuilder = derror_maker(build_py.build_py, msg)
extbuilder = derror_maker(build_ext.build_ext, msg)
def package_check(*args, **kwargs):
raise RuntimeError(msg + " or try 'python setup_egg.py install'")
else: # We have nibabel
pybuilder = get_comrec_build('dipy')
# Cython is a dependency for building extensions, iff we don't have stamped
# up pyx and c files.
build_ext = cyproc_exts(EXTS, CYTHON_MIN_VERSION, 'pyx-stamps')
# Add openmp flags if they work
simple_test_c = """int main(int argc, char** argv) { return(0); }"""
omp_test_c = """#include <omp.h>
int main(int argc, char** argv) { return(0); }"""
extbuilder = add_flag_checking(
build_ext, [[['/arch:SSE2'], [], simple_test_c, 'USING_VC_SSE2'],
[['-msse2', '-mfpmath=sse'], [], simple_test_c, 'USING_GCC_SSE2'],
[['-fopenmp'], ['-fopenmp'], omp_test_c, 'HAVE_OPENMP']], 'dipy')
# Installer that checks for install-time dependencies
class installer(install.install):
def run(self):
if os.path.exists('MANIFEST'): os.remove('MANIFEST')
# For some commands, use setuptools.
if len(set(('develop', 'bdist_egg', 'bdist_rpm', 'bdist', 'bdist_dumb',
'bdist_wininst', 'install_egg_info', 'egg_info', 'easy_install',
)).intersection(sys.argv)) > 0:
# setup_egg imports setuptools setup, thus monkeypatching distutils.
import setup_egg
from distutils.core import setup
# Python 2 to 3 build
from nisext.py3builder import build_py
# Commit hash writing, and dependency checking
from nisext.sexts import get_comrec_build, package_check
cmdclass = {'build_py': get_comrec_build('nibabel', build_py)}
# Get version and release info, which is all stored in nibabel/info.py
ver_file = os.path.join('nibabel', 'info.py')
exec(open(ver_file).read())
# Do dependency checking
package_check('numpy', NUMPY_MIN_VERSION)
custom_pydicom_messages = {'missing opt': 'Missing optional package "%s"'
' provided by package "pydicom"'
}
package_check('dicom',
PYDICOM_MIN_VERSION,
optional=True,
messages = custom_pydicom_messages)
extra_setuptools_args = {}
# For some commands, use setuptools.
if len(
set(('develop', 'bdist_egg', 'bdist_rpm', 'bdist', 'bdist_dumb',
'install_egg_info', 'egg_info', 'easy_install', 'bdist_wheel',
'bdist_mpkg')).intersection(sys.argv)) > 0:
# setup_egg imports setuptools setup, thus monkeypatching distutils.
import setup_egg # noqa
from distutils.core import setup
# Commit hash writing, and dependency checking
from nisext.sexts import get_comrec_build, package_check, install_scripts_bat
cmdclass = {
'build_py': get_comrec_build('nibabel'),
'install_scripts': install_scripts_bat
}
# Get version and release info, which is all stored in nibabel/info.py
ver_file = os.path.join('nibabel', 'info.py')
exec(open(ver_file).read())
# Prepare setuptools args
if 'setuptools' in sys.modules:
extra_setuptools_args = dict(
tests_require=['nose'],
test_suite='nose.collector',
zip_safe=False,
extras_require=dict(doc='Sphinx>=0.3', test='nose>=0.10.1'),
)
if os.path.exists('MANIFEST'):
os.remove('MANIFEST')
# For some commands, use setuptools.
if len(set(('develop', 'bdist_egg', 'bdist_rpm', 'bdist', 'bdist_dumb',
'install_egg_info', 'egg_info', 'easy_install', 'bdist_wheel',
'bdist_mpkg')).intersection(sys.argv)) > 0:
# setup_egg imports setuptools setup, thus monkeypatching distutils.
import setup_egg # noqa
from distutils.core import setup
# Commit hash writing, and dependency checking
from nisext.sexts import (get_comrec_build, package_check, install_scripts_bat,
read_vars_from)
cmdclass = {'build_py': get_comrec_build('nibabel'),
'install_scripts': install_scripts_bat}
# Get project related strings.
INFO = read_vars_from(pjoin('nibabel', 'info.py'))
# Prepare setuptools args
if 'setuptools' in sys.modules:
extra_setuptools_args = dict(
tests_require=['nose'],
test_suite='nose.collector',
zip_safe=False,
extras_require=dict(
doc='Sphinx>=0.3',
test='nose>=0.10.1'),
)
from distutils.core import setup
from distutils.extension import Extension
# extra_setuptools_args can be defined from the line above, but it can
# also be defined here because setup.py has been exec'ed from
# setup_egg.py.
if not 'extra_setuptools_args' in globals():
extra_setuptools_args = dict()
# Import build helpers
try:
from nisext.sexts import package_check, get_comrec_build
except ImportError:
raise RuntimeError('Need nisext package from nibabel installation'
' - please install nibabel first')
cmdclass = {'build_py': get_comrec_build('dipy')}
# Get version and release info, which is all stored in dipy/info.py
ver_file = os.path.join('dipy', 'info.py')
execfile(ver_file)
# We're running via setuptools - specify exta setuptools stuff
if 'setuptools' in sys.modules:
extra_setuptools_args['extras_require'] = dict(
doc=['Sphinx>=1.0'],
test=['nose>=0.10.1'],
)
# I removed numpy and scipy from install requires because easy_install seems
# to want to fetch these if they are already installed, meaning of course
# that there's a long fragile and unnecessary compile before the install
# finishes.
"""
import sys
from glob import glob
# Import build helpers
try:
from nisext.sexts import package_check, get_comrec_build
except ImportError:
raise RuntimeError('Need nisext package from nibabel installation'
' - please install nibabel first')
from build_docs import cmdclass, INFO_VARS
# Add custom commit-recording build command
cmdclass['build_py'] = get_comrec_build('bips')
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration
config = Configuration(None, parent_package, top_path)
config.set_options(ignore_setup_xxx_py=True,
assume_default_configuration=True,
delegate_options_to_subpackages=True,
quiet=True)
# The quiet=True option will silence all of the name setting warnings:
# Ignoring attempt to set 'name' (from 'nipy.core' to
# 'nipy.core.image')
# Robert Kern recommends setting quiet=True on the numpy list, stating
# these messages are probably only used in debugging numpy distutils.
# Import build helpers
try:
from nisext.sexts import package_check, get_comrec_build
except ImportError:
raise RuntimeError('Need nisext package from nibabel installation'
' - please install nibabel first')
from build_helpers import (generate_a_pyrex_source,
cmdclass, INFO_VARS)
# monkey-patch numpy distutils to use Cython instead of Pyrex
from numpy.distutils.command.build_src import build_src
build_src.generate_a_pyrex_source = generate_a_pyrex_source
# Add custom commit-recording build command
from numpy.distutils.command.build_py import build_py
cmdclass['build_py'] = get_comrec_build('nipy', build_py)
def configuration(parent_package='',top_path=None):
from numpy.distutils.misc_util import Configuration
config = Configuration(None, parent_package, top_path)
config.set_options(ignore_setup_xxx_py=True,
assume_default_configuration=True,
delegate_options_to_subpackages=True,
quiet=True)
# The quiet=True option will silence all of the name setting warnings:
# Ignoring attempt to set 'name' (from 'nipy.core' to
# 'nipy.core.image')
# Robert Kern recommends setting quiet=True on the numpy list, stating
# these messages are probably only used in debugging numpy distutils.
config.get_version(pjoin('nipy', 'info.py')) # sets config.version
if os.path.exists('MANIFEST'): os.remove('MANIFEST')
# For some commands, use setuptools.
if len(set(('develop', 'bdist_egg', 'bdist_rpm', 'bdist', 'bdist_dumb',
'bdist_wininst', 'install_egg_info', 'egg_info', 'easy_install',
)).intersection(sys.argv)) > 0:
# setup_egg imports setuptools setup, thus monkeypatching distutils.
import setup_egg
from distutils.core import setup
# Python 2 to 3 build
from nisext.py3builder import build_py
# Commit hash writing, and dependency checking
from nisext.sexts import get_comrec_build, package_check
cmdclass = {'build_py': get_comrec_build('mindboggle', build_py)}
# Get version and release info, which is all stored in mindboggle/info.py
ver_file = os.path.join('mindboggle', 'info.py')
exec(open(ver_file).read())
# Do dependency checking
#package_check('numpy', NUMPY_MIN_VERSION)
extra_setuptools_args = {}
if 'setuptools' in sys.modules:
extra_setuptools_args = dict(
tests_require=['nose'],
test_suite='nose.collector',
zip_safe=False,
extras_require = dict(
"""
import sys
from glob import glob
# Import build helpers
try:
from nisext.sexts import package_check, get_comrec_build
except ImportError:
raise RuntimeError("Need nisext package from nibabel installation" " - please install nibabel first")
from build_docs import cmdclass, INFO_VARS
# Add custom commit-recording build command
cmdclass["build_py"] = get_comrec_build("nipype")
def configuration(parent_package="", top_path=None):
from numpy.distutils.misc_util import Configuration
config = Configuration(None, parent_package, top_path)
config.set_options(
ignore_setup_xxx_py=True, assume_default_configuration=True, delegate_options_to_subpackages=True, quiet=True
)
# The quiet=True option will silence all of the name setting warnings:
# Ignoring attempt to set 'name' (from 'nipy.core' to
# 'nipy.core.image')
# Robert Kern recommends setting quiet=True on the numpy list, stating
# these messages are probably only used in debugging numpy distutils.
config.get_version("nipype/__init__.py") # sets config.version
# Import build helpers
try:
from nisext.sexts import package_check, get_comrec_build
except ImportError:
raise RuntimeError('Need nisext package from nibabel installation'
' - please install nibabel first')
from setup_helpers import (generate_a_pyrex_source, cmdclass, INFO_VARS,
build_py) # build_py will do 2to3 for Python3
# monkey-patch numpy distutils to use Cython instead of Pyrex
from numpy.distutils.command.build_src import build_src
build_src.generate_a_pyrex_source = generate_a_pyrex_source
# Add custom commit-recording build command
cmdclass['build_py'] = get_comrec_build('nipy', build_py)
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration
config = Configuration(None, parent_package, top_path)
config.set_options(ignore_setup_xxx_py=True,
assume_default_configuration=True,
delegate_options_to_subpackages=True,
quiet=True)
# The quiet=True option will silence all of the name setting warnings:
# Ignoring attempt to set 'name' (from 'nipy.core' to
# 'nipy.core.image')
# Robert Kern recommends setting quiet=True on the numpy list, stating
# these messages are probably only used in debugging numpy distutils.
"""
import sys
from glob import glob
# Import build helpers
try:
from nisext.sexts import package_check, get_comrec_build
except ImportError:
raise RuntimeError('Need nisext package from nibabel installation'
' - please install nibabel first')
from build_docs import cmdclass, INFO_VARS
# Add custom commit-recording build command
cmdclass['build_py'] = get_comrec_build('bips')
def configuration(parent_package='',top_path=None):
from numpy.distutils.misc_util import Configuration
config = Configuration(None, parent_package, top_path)
config.set_options(ignore_setup_xxx_py=True,
assume_default_configuration=True,
delegate_options_to_subpackages=True,
quiet=True)
# The quiet=True option will silence all of the name setting warnings:
# Ignoring attempt to set 'name' (from 'nipy.core' to
# 'nipy.core.image')
# Robert Kern recommends setting quiet=True on the numpy list, stating
# these messages are probably only used in debugging numpy distutils.
config.get_version('bips/__init__.py') # sets config.version
EXTS.append(Extension(modulename, [pyx_src] + other_sources, include_dirs=[np.get_include(), "src"]))
# Do our own build and install time dependency checking. setup.py gets called in
# many different ways, and may be called just to collect information (egg_info).
# We need to set up tripwires to raise errors when actually doing things, like
# building, rather than unconditionally in the setup.py import or exec
# We may make tripwire versions of build_ext, build_py, install
try:
from nisext.sexts import package_check, get_comrec_build
except ImportError: # No nibabel
msg = "Need nisext package from nibabel installation" " - please install nibabel first"
pybuilder = derror_maker(build_py.build_py, msg)
extbuilder = derror_maker(build_ext.build_ext, msg)
else: # We have nibabel
pybuilder = get_comrec_build("dipy")
# Cython is a dependency for building extensions, iff we don't have stamped
# up pyx and c files.
extbuilder = cyproc_exts(EXTS, CYTHON_MIN_VERSION, "pyx-stamps")
# Installer that checks for install-time dependencies
class installer(install.install):
def run(self):
package_check("numpy", NUMPY_MIN_VERSION)
package_check("scipy", SCIPY_MIN_VERSION)
package_check("nibabel", NIBABEL_MIN_VERSION)
install.install.run(self)
cmdclass = dict(
build_py=pybuilder,
).intersection(sys.argv)
)
> 0
):
# setup_egg imports setuptools setup, thus monkeypatching distutils.
import setup_egg
from distutils.core import setup
# Python 2 to 3 build
from nisext.py3builder import build_py
# Commit hash writing, and dependency checking
from nisext.sexts import get_comrec_build, package_check
cmdclass = {"build_py": get_comrec_build("nibabel", build_py)}
# Get version and release info, which is all stored in nibabel/info.py
ver_file = os.path.join("nibabel", "info.py")
exec(open(ver_file).read())
# Do dependency checking
package_check("numpy", NUMPY_MIN_VERSION)
custom_pydicom_messages = {"missing opt": 'Missing optional package "%s"' ' provided by package "pydicom"'}
package_check("dicom", PYDICOM_MIN_VERSION, optional=True, messages=custom_pydicom_messages)
extra_setuptools_args = {}
if "setuptools" in sys.modules:
extra_setuptools_args = dict(
tests_require=["nose"],
test_suite="nose.collector",
zip_safe=False,