def test_004(self):
xnat.plot_segment(config='.xnat.cfg',
experiment_id='BBRCDEV_E02859',
axes='x',
raw=False,
animated=False,
savefig=None)
def test_xnat_freesurfer7_extras_010(self):
from nisnap import xnat
xnat.plot_segment(config='.xnat.cfg',
experiment_id='BBRCDEV_E02823',
resource_name='FREESURFER7_EXTRAS',
savefig='/tmp/test.png',
fn='hypothalamic_subunits_seg.v1.mgz')
xnat.plot_segment(config='.xnat.cfg',
experiment_id='BBRCDEV_E02823',
resource_name='FREESURFER7',
savefig='/tmp/test.png')
def test_xnat_spm12_006(self):
from nisnap import xnat
xnat.plot_segment(config='.xnat.cfg',
experiment_id='BBRCDEV_E02859',
resource_name='SPM12_SEGMENT',
axes='x',
opacity=100,
slices=range(160, 180, 3),
rowsize={'x': 9},
animated=False,
contours=True,
cache=True)
def test_xnat_cat12_008(self):
from nisnap import xnat
xnat.plot_segment(config='.xnat.cfg',
experiment_id='BBRCDEV_E00375',
resource_name='CAT12_SEGMENT',
figsize=(10, 3),
axes='x',
opacity=50,
slices=range(160, 180, 3),
rowsize=9,
animated=False,
contours=False,
cache=False,
samebox=True)
def test_007_ashs(self):
figsize = {'x': (10, 3)}
from nisnap import xnat
xnat.plot_segment(config='.xnat.cfg',
experiment_id='BBRCDEV_E02443',
resource_name='ASHS',
figsize=figsize,
axes='x',
opacity=50,
slices=range(8, 27, 1),
rowsize=5,
animated=True,
raw=False,
contours=False,
cache=False)