def test_generate_report_no_segments(self):
''' test of FAST's report under no segments conditions '''
bet_interface = BETRPT(in_file=MNI_2MM, mask=True)
bet_interface.run()
skullstripped = bet_interface.aggregate_outputs().out_file
report_interface = FASTRPT(in_files=skullstripped,
generate_report=True,
no_bias=True,
probability_maps=True,
out_basename='test')
_smoke_test_report(report_interface, 'testFAST_no_segments.html')
def test_compression(self):
''' test if compression makes files smaller '''
uncompressed_int = BETRPT(in_file=MNI_2MM,
generate_report=True,
mask=True,
compress_report=False)
uncompressed_int.run()
uncompressed_report = uncompressed_int.inputs.out_report
compressed_int = BETRPT(in_file=MNI_2MM,
generate_report=True,
mask=True,
compress_report=True)
compressed_int.run()
compressed_report = compressed_int.inputs.out_report
unittest.TestCase.assertTrue(
int(os.stat(uncompressed_report).st_size) > int(
os.stat(compressed_report).st_size),
'An uncompressed report is bigger than '
'a compressed report')
def test_compression(self):
''' test if compression makes files smaller '''
uncompressed_int = BETRPT(in_file=MNI_2MM,
generate_report=True,
mask=True,
compress_report=False)
uncompressed_int.run()
uncompressed_report = uncompressed_int.inputs.out_report
compressed_int = BETRPT(in_file=MNI_2MM,
generate_report=True,
mask=True,
compress_report=True)
compressed_int.run()
compressed_report = compressed_int.inputs.out_report
size = int(os.stat(uncompressed_report).st_size)
size_compress = int(os.stat(compressed_report).st_size)
assert size >= size_compress, (
'The uncompressed report is smaller (%d)'
'than the compressed report (%d)' % (size, size_compress))
