class BIDSDataGrabberOutputSpec(TraitedSpec):
out_dict = traits.Dict(desc='output data structure')
fmap = OutputMultiPath(desc='output fieldmaps')
bold = OutputMultiPath(desc='output functional images')
sbref = OutputMultiPath(desc='output sbrefs')
t1w = OutputMultiPath(desc='output T1w images')
t2w = OutputMultiPath(desc='output T2w images')
class BIDSDataGrabberOutputSpec(TraitedSpec):
out_dict = traits.Dict(desc='output data structure')
preproc = OutputMultiPath(desc='output preproc functional images')
mask = OutputMultiPath(desc='output masks for functional images')
MELODICmix = OutputMultiPath(desc='output MELODICmix')
AROMAnoiseICs = OutputMultiPath(desc='output AROMAnoiseICs')
confounds = OutputMultiPath(desc='output confounds')
class TemplateDimensionsOutputSpec(TraitedSpec):
t1w_valid_list = OutputMultiPath(exists=True, desc='valid T1w images')
target_zooms = traits.Tuple(traits.Float, traits.Float, traits.Float,
desc='Target zoom information')
target_shape = traits.Tuple(traits.Int, traits.Int, traits.Int,
desc='Target shape information')
out_report = File(exists=True, desc='conformation report')
class IntraModalMergeOutputSpec(TraitedSpec):
out_file = File(exists=True, desc='merged image')
out_avg = File(exists=True, desc='average image')
out_mats = OutputMultiPath(exists=True, desc='output matrices')
out_movpar = OutputMultiPath(exists=True, desc='output movement parameters')
class ConformSeriesOutputSpec(TraitedSpec):
t1w_list = OutputMultiPath(exists=True, desc='conformed T1w images')
out_report = File(exists=True, desc='conformation report')
class DerivativesDataSinkOutputSpec(TraitedSpec):
out_file = OutputMultiPath(File(exists=True, desc='written file path'))
class DerivativesDataSinkOutputSpec(TraitedSpec):
out_file = OutputMultiPath(File(exists=True, desc='written file path'))
compression = OutputMultiPath(
traits.Bool,
desc='whether ``in_file`` was compressed/uncompressed '
'or `it was copied directly.')
class MultiApplyTransformsOutputSpec(TraitedSpec):
out_files = OutputMultiPath(File(), desc='the output ITKTransform file')
log_cmdline = File(desc='a list of command lines used to apply transforms')
class ConformSeriesOutputSpec(TraitedSpec):
t1w_list = OutputMultiPath(exists=True, desc='output T1w images')
class ExtractB0OutputSpec(TraitedSpec):
ref_img = File(exists=True,
desc='First B0 image in dwi data to be used as reference')
out_imgs = OutputMultiPath(File(exists=True, desc='All other B0 images'))