Python MacrophageCellList.remove_if_sporeless Examples

Example #1

def test_sporeless30(macrophage_list: MacrophageCellList,
                     grid: RectangularGrid, fungus_list: FungusCellList):
    # should release all conidia

    point = Point(x=35, y=35, z=35)
    for _ in range(0, 30):
        macrophage_list.append(MacrophageCellData.create_cell(point=point))

    fungus_list.append(
        FungusCellData.create_cell(point=point,
                                   status=FungusCellData.Status.RESTING,
                                   form=FungusCellData.Form.HYPHAE))

    macrophage_list.remove_if_sporeless(0.3)
    assert len(macrophage_list.alive()) < 30

Example #2

def test_sporeless1(macrophage_list: MacrophageCellList, grid: RectangularGrid,
                    fungus_list: FungusCellList):
    # should release all conidia

    point = Point(x=35, y=35, z=35)
    macrophage_list.append(MacrophageCellData.create_cell(point=point))
    fungus_list.append(
        FungusCellData.create_cell(point=point,
                                   status=FungusCellData.Status.RESTING))

    if len(
            fungus_list.alive(fungus_list.cell_data['form'] ==
                              FungusCellData.Form.CONIDIA)) == 0:
        macrophage_list.remove_if_sporeless(0.1)
    assert not macrophage_list.cell_data[0]['dead']

    macrophage_list.remove_if_sporeless(0.1)
    assert macrophage_list.cell_data[0]['dead']