def testResolution(self):
"""
Test that numbers within the same resolution return the same encoding.
Numbers outside the resolution should return different encodings.
"""
encoder = RandomDistributedScalarEncoder(name="encoder",
resolution=1.0)
# Since 23.0 is the first encoded number, it will be the offset.
# Since resolution is 1, 22.9 and 23.4 should have the same bucket index and
# encoding.
e23 = encoder.encode(23.0)
e23p1 = encoder.encode(23.1)
e22p9 = encoder.encode(22.9)
e24 = encoder.encode(24.0)
self.assertEqual(e23.sum(), encoder.w)
self.assertEqual(
(e23 == e23p1).sum(), encoder.getWidth(),
"Numbers within resolution don't have the same encoding")
self.assertEqual(
(e23 == e22p9).sum(), encoder.getWidth(),
"Numbers within resolution don't have the same encoding")
self.assertNotEqual(
(e23 == e24).sum(), encoder.getWidth(),
"Numbers outside resolution have the same encoding")
e22p9 = encoder.encode(22.5)
self.assertNotEqual(
(e23 == e22p9).sum(), encoder.getWidth(),
"Numbers outside resolution have the same encoding")
def testMissingValues(self):
"""
Test that missing values and NaN return all zero's.
"""
encoder = RandomDistributedScalarEncoder(name="encoder",
resolution=1.0)
empty = encoder.encode(SENTINEL_VALUE_FOR_MISSING_DATA)
self.assertEqual(empty.sum(), 0)
empty = encoder.encode(float("nan"))
self.assertEqual(empty.sum(), 0)
def testGetMethods(self):
"""
Test that the getWidth, getDescription, and getDecoderOutputFieldTypes
methods work.
"""
encoder = RandomDistributedScalarEncoder(name="theName",
resolution=1.0,
n=500)
self.assertEqual(encoder.getWidth(), 500,
"getWidth doesn't return the correct result")
self.assertEqual(encoder.getDescription(), [("theName", 0)],
"getDescription doesn't return the correct result")
self.assertEqual(
encoder.getDecoderOutputFieldTypes(), (FieldMetaType.float, ),
"getDecoderOutputFieldTypes doesn't return the correct"
" result")
def testEncoding(self):
"""
Test basic encoding functionality. Create encodings without crashing and
check they contain the correct number of on and off bits. Check some
encodings for expected overlap. Test that encodings for old values don't
change once we generate new buckets.
"""
# Initialize with non-default parameters and encode with a number close to
# the offset
encoder = RandomDistributedScalarEncoder(name="encoder",
resolution=1.0,
w=23,
n=500,
offset=0.0)
e0 = encoder.encode(-0.1)
self.assertEqual(e0.sum(), 23, "Number of on bits is incorrect")
self.assertEqual(e0.size, 500, "Width of the vector is incorrect")
self.assertEqual(
encoder.getBucketIndices(0.0)[0], encoder._maxBuckets / 2,
"Offset doesn't correspond to middle bucket")
self.assertEqual(len(encoder.bucketMap), 1,
"Number of buckets is not 1")
# Encode with a number that is resolution away from offset. Now we should
# have two buckets and this encoding should be one bit away from e0
e1 = encoder.encode(1.0)
self.assertEqual(len(encoder.bucketMap), 2,
"Number of buckets is not 2")
self.assertEqual(e1.sum(), 23, "Number of on bits is incorrect")
self.assertEqual(e1.size, 500, "Width of the vector is incorrect")
self.assertEqual(computeOverlap(e0, e1), 22,
"Overlap is not equal to w-1")
# Encode with a number that is resolution*w away from offset. Now we should
# have many buckets and this encoding should have very little overlap with
# e0
e25 = encoder.encode(25.0)
self.assertGreater(len(encoder.bucketMap), 23,
"Number of buckets is not 2")
self.assertEqual(e25.sum(), 23, "Number of on bits is incorrect")
self.assertEqual(e25.size, 500, "Width of the vector is incorrect")
self.assertLess(computeOverlap(e0, e25), 4, "Overlap is too high")
# Test encoding consistency. The encodings for previous numbers
# shouldn't change even though we have added additional buckets
self.assertTrue(
numpy.array_equal(e0, encoder.encode(-0.1)),
"Encodings are not consistent - they have changed after new buckets "
"have been created")
self.assertTrue(
numpy.array_equal(e1, encoder.encode(1.0)),
"Encodings are not consistent - they have changed after new buckets "
"have been created")
def testParameterChecks(self):
"""
Test that some bad construction parameters get handled.
"""
# n must be >= 6*w
with self.assertRaises(ValueError):
RandomDistributedScalarEncoder(name="mv",
resolution=1.0,
n=int(5.9 * 21))
# n must be an int
with self.assertRaises(ValueError):
RandomDistributedScalarEncoder(name="mv",
resolution=1.0,
n=5.9 * 21)
# w can't be negative
with self.assertRaises(ValueError):
RandomDistributedScalarEncoder(name="mv", resolution=1.0, w=-1)
# resolution can't be negative
with self.assertRaises(ValueError):
RandomDistributedScalarEncoder(name="mv", resolution=-2)
def testVerbosity(self):
"""
Test that nothing is printed out when verbosity=0
"""
_stdout = sys.stdout
sys.stdout = _stringio = StringIO()
encoder = RandomDistributedScalarEncoder(name="mv",
resolution=1.0,
verbosity=0)
output = numpy.zeros(encoder.getWidth(), dtype=defaultDtype)
encoder.encodeIntoArray(23.0, output)
encoder.getBucketIndices(23.0)
sys.stdout = _stdout
self.assertEqual(len(_stringio.getvalue()), 0,
"zero verbosity doesn't lead to zero output")
def testOffset(self):
"""
Test that offset is working properly
"""
encoder = RandomDistributedScalarEncoder(name="encoder",
resolution=1.0)
encoder.encode(23.0)
self.assertEqual(
encoder._offset, 23.0,
"Offset not specified and not initialized to first input")
encoder = RandomDistributedScalarEncoder(name="encoder",
resolution=1.0,
offset=25.0)
encoder.encode(23.0)
self.assertEqual(
encoder._offset, 25.0,
"Offset not initialized to specified constructor"
" parameter")
def testOverlapStatistics(self):
"""
Check that the overlaps for the encodings are within the expected range.
Here we ask the encoder to create a bunch of representations under somewhat
stressful conditions, and then verify they are correct. We rely on the fact
that the _overlapOK and _countOverlapIndices methods are working correctly.
"""
seed = getSeed()
# Generate about 600 encodings. Set n relatively low to increase
# chance of false overlaps
encoder = RandomDistributedScalarEncoder(resolution=1.0,
w=11,
n=150,
seed=seed)
encoder.encode(0.0)
encoder.encode(-300.0)
encoder.encode(300.0)
self.assertTrue(validateEncoder(encoder, subsampling=3),
"Illegal overlap encountered in encoder")
def testWriteRead(self):
original = RandomDistributedScalarEncoder(name="encoder",
resolution=1.0,
w=23,
n=500,
offset=0.0)
originalValue = original.encode(1)
proto1 = RandomDistributedScalarEncoderProto.new_message()
original.write(proto1)
# Write the proto to a temp file and read it back into a new proto
with tempfile.TemporaryFile() as f:
proto1.write(f)
f.seek(0)
proto2 = RandomDistributedScalarEncoderProto.read(f)
encoder = RandomDistributedScalarEncoder.read(proto2)
self.assertIsInstance(encoder, RandomDistributedScalarEncoder)
self.assertEqual(encoder.resolution, original.resolution)
self.assertEqual(encoder.w, original.w)
self.assertEqual(encoder.n, original.n)
self.assertEqual(encoder.name, original.name)
self.assertEqual(encoder.verbosity, original.verbosity)
self.assertEqual(encoder.minIndex, original.minIndex)
self.assertEqual(encoder.maxIndex, original.maxIndex)
encodedFromOriginal = original.encode(1)
encodedFromNew = encoder.encode(1)
self.assertTrue(numpy.array_equal(encodedFromNew, originalValue))
self.assertEqual(original.decode(encodedFromNew),
encoder.decode(encodedFromOriginal))
self.assertEqual(original.random.getSeed(), encoder.random.getSeed())
for key, value in original.bucketMap.items():
self.assertTrue(numpy.array_equal(value, encoder.bucketMap[key]))
def testCountOverlap(self):
"""
Test that the internal method _countOverlap works as expected.
"""
encoder = RandomDistributedScalarEncoder(name="encoder",
resolution=1.0,
n=500)
r1 = numpy.array([1, 2, 3, 4, 5, 6])
r2 = numpy.array([1, 2, 3, 4, 5, 6])
self.assertEqual(encoder._countOverlap(r1, r2), 6,
"_countOverlap result is incorrect")
r1 = numpy.array([1, 2, 3, 4, 5, 6])
r2 = numpy.array([1, 2, 3, 4, 5, 7])
self.assertEqual(encoder._countOverlap(r1, r2), 5,
"_countOverlap result is incorrect")
r1 = numpy.array([1, 2, 3, 4, 5, 6])
r2 = numpy.array([6, 5, 4, 3, 2, 1])
self.assertEqual(encoder._countOverlap(r1, r2), 6,
"_countOverlap result is incorrect")
r1 = numpy.array([1, 2, 8, 4, 5, 6])
r2 = numpy.array([1, 2, 3, 4, 9, 6])
self.assertEqual(encoder._countOverlap(r1, r2), 4,
"_countOverlap result is incorrect")
r1 = numpy.array([1, 2, 3, 4, 5, 6])
r2 = numpy.array([1, 2, 3])
self.assertEqual(encoder._countOverlap(r1, r2), 3,
"_countOverlap result is incorrect")
r1 = numpy.array([7, 8, 9, 10, 11, 12])
r2 = numpy.array([1, 2, 3, 4, 5, 6])
self.assertEqual(encoder._countOverlap(r1, r2), 0,
"_countOverlap result is incorrect")
def testEncodeInvalidInputType(self):
encoder = RandomDistributedScalarEncoder(name="encoder",
resolution=1.0,
verbosity=0)
with self.assertRaises(TypeError):
encoder.encode("String")
def testOverlapOK(self):
"""
Test that the internal method _overlapOK works as expected.
"""
# Create a fake set of encodings.
encoder = RandomDistributedScalarEncoder(name="encoder",
resolution=1.0,
w=5,
n=5 * 20)
midIdx = encoder._maxBuckets / 2
encoder.bucketMap[midIdx - 3] = numpy.array(range(4, 9)) # Not ok with
# midIdx-1
encoder.bucketMap[midIdx - 2] = numpy.array(range(3, 8))
encoder.bucketMap[midIdx - 1] = numpy.array(range(4, 9))
encoder.bucketMap[midIdx] = numpy.array(range(5, 10))
encoder.bucketMap[midIdx + 1] = numpy.array(range(6, 11))
encoder.bucketMap[midIdx + 2] = numpy.array(range(7, 12))
encoder.bucketMap[midIdx + 3] = numpy.array(range(8, 13))
encoder.minIndex = midIdx - 3
encoder.maxIndex = midIdx + 3
self.assertTrue(encoder._overlapOK(midIdx, midIdx - 1),
"_overlapOK didn't work")
self.assertTrue(encoder._overlapOK(midIdx - 2, midIdx + 3),
"_overlapOK didn't work")
self.assertFalse(encoder._overlapOK(midIdx - 3, midIdx - 1),
"_overlapOK didn't work")
# We'll just use our own numbers
self.assertTrue(encoder._overlapOK(100, 50, 0),
"_overlapOK didn't work for far values")
self.assertTrue(encoder._overlapOK(100, 50, encoder._maxOverlap),
"_overlapOK didn't work for far values")
self.assertFalse(encoder._overlapOK(100, 50, encoder._maxOverlap + 1),
"_overlapOK didn't work for far values")
self.assertTrue(encoder._overlapOK(50, 50, 5),
"_overlapOK didn't work for near values")
self.assertTrue(encoder._overlapOK(48, 50, 3),
"_overlapOK didn't work for near values")
self.assertTrue(encoder._overlapOK(46, 50, 1),
"_overlapOK didn't work for near values")
self.assertTrue(encoder._overlapOK(45, 50, encoder._maxOverlap),
"_overlapOK didn't work for near values")
self.assertFalse(encoder._overlapOK(48, 50, 4),
"_overlapOK didn't work for near values")
self.assertFalse(encoder._overlapOK(48, 50, 2),
"_overlapOK didn't work for near values")
self.assertFalse(encoder._overlapOK(46, 50, 2),
"_overlapOK didn't work for near values")
self.assertFalse(encoder._overlapOK(50, 50, 6),
"_overlapOK didn't work for near values")
def testCountOverlapIndices(self):
"""
Test that the internal method _countOverlapIndices works as expected.
"""
# Create a fake set of encodings.
encoder = RandomDistributedScalarEncoder(name="encoder",
resolution=1.0,
w=5,
n=5 * 20)
midIdx = encoder._maxBuckets / 2
encoder.bucketMap[midIdx - 2] = numpy.array(range(3, 8))
encoder.bucketMap[midIdx - 1] = numpy.array(range(4, 9))
encoder.bucketMap[midIdx] = numpy.array(range(5, 10))
encoder.bucketMap[midIdx + 1] = numpy.array(range(6, 11))
encoder.bucketMap[midIdx + 2] = numpy.array(range(7, 12))
encoder.bucketMap[midIdx + 3] = numpy.array(range(8, 13))
encoder.minIndex = midIdx - 2
encoder.maxIndex = midIdx + 3
# Indices must exist
with self.assertRaises(ValueError):
encoder._countOverlapIndices(midIdx - 3, midIdx - 2)
with self.assertRaises(ValueError):
encoder._countOverlapIndices(midIdx - 2, midIdx - 3)
# Test some overlaps
self.assertEqual(encoder._countOverlapIndices(midIdx - 2, midIdx - 2),
5, "_countOverlapIndices didn't work")
self.assertEqual(encoder._countOverlapIndices(midIdx - 1, midIdx - 2),
4, "_countOverlapIndices didn't work")
self.assertEqual(encoder._countOverlapIndices(midIdx + 1, midIdx - 2),
2, "_countOverlapIndices didn't work")
self.assertEqual(encoder._countOverlapIndices(midIdx - 2, midIdx + 3),
0, "_countOverlapIndices didn't work")
def testSeed(self):
"""
Test that initializing twice with the same seed returns identical encodings
and different when not specified
"""
encoder1 = RandomDistributedScalarEncoder(name="encoder1",
resolution=1.0,
seed=42)
encoder2 = RandomDistributedScalarEncoder(name="encoder2",
resolution=1.0,
seed=42)
encoder3 = RandomDistributedScalarEncoder(name="encoder3",
resolution=1.0,
seed=-1)
encoder4 = RandomDistributedScalarEncoder(name="encoder4",
resolution=1.0,
seed=-1)
e1 = encoder1.encode(23.0)
e2 = encoder2.encode(23.0)
e3 = encoder3.encode(23.0)
e4 = encoder4.encode(23.0)
self.assertEqual((e1 == e2).sum(), encoder1.getWidth(),
"Same seed gives rise to different encodings")
self.assertNotEqual((e1 == e3).sum(), encoder1.getWidth(),
"Different seeds gives rise to same encodings")
self.assertNotEqual((e3 == e4).sum(), encoder1.getWidth(),
"seeds of -1 give rise to same encodings")
def testMapBucketIndexToNonZeroBits(self):
"""
Test that mapBucketIndexToNonZeroBits works and that max buckets and
clipping are handled properly.
"""
encoder = RandomDistributedScalarEncoder(resolution=1.0, w=11, n=150)
# Set a low number of max buckets
encoder._initializeBucketMap(10, None)
encoder.encode(0.0)
encoder.encode(-7.0)
encoder.encode(7.0)
self.assertEqual(len(encoder.bucketMap), encoder._maxBuckets,
"_maxBuckets exceeded")
self.assertTrue(
numpy.array_equal(encoder.mapBucketIndexToNonZeroBits(-1),
encoder.bucketMap[0]),
"mapBucketIndexToNonZeroBits did not handle negative"
" index")
self.assertTrue(
numpy.array_equal(encoder.mapBucketIndexToNonZeroBits(1000),
encoder.bucketMap[9]),
"mapBucketIndexToNonZeroBits did not handle negative index")
e23 = encoder.encode(23.0)
e6 = encoder.encode(6)
self.assertEqual((e23 == e6).sum(), encoder.getWidth(),
"Values not clipped correctly during encoding")
ep8 = encoder.encode(-8)
ep7 = encoder.encode(-7)
self.assertEqual((ep8 == ep7).sum(), encoder.getWidth(),
"Values not clipped correctly during encoding")
self.assertEqual(
encoder.getBucketIndices(-8)[0], 0,
"getBucketIndices returned negative bucket index")
self.assertEqual(
encoder.getBucketIndices(23)[0], encoder._maxBuckets - 1,
"getBucketIndices returned bucket index that is too"
" large")
return MA
var_chosen = 'value'
Data = ma_preprocess(Data[var_chosen], 4).rename(columns={0: var_chosen})
Data['Anomaly'] = 0.0
Data['Anomaly_Likelihood'] = 0.0
prec_param = 5
pooler_out = 2024
cell_col = 5
# Value Encoder Resoltion
Res = Data.std()[0] / prec_param
RDSE = RandomDistributedScalarEncoder(resolution=Res)
# We ecndoe now the datas
TODE = DateEncoder(timeOfDay=(21, 1))
WENDE = DateEncoder(weekend=21)
# Spatial Pooler Parameters
var_encoders = {Encoder('value', ['RDSE'])}
# Encoder('_index', ['TODE'])}
encoder_width = 0
for x in var_encoders:
for y in x.encoders:
exec("s = " + y + ".getWidth()")
encoder_width += s