def main():
parser = argparse.ArgumentParser(description="Perform CCTW transform")
parser.add_argument('-d',
'--directory',
required=True,
help='scan directory')
parser.add_argument('-e',
'--entries',
default=['f1', 'f2', 'f3'],
nargs='+',
help='names of entries to be processed')
parser.add_argument('-m',
'--mask',
action='store_true',
help='use 3D mask')
parser.add_argument('-qh', nargs=3, help='Qh - min, step, max')
parser.add_argument('-qk', nargs=3, help='Qk - min, step, max')
parser.add_argument('-ql', nargs=3, help='Ql - min, step, max')
parser.add_argument('-r',
'--radius',
default=200,
help='radius of mask around each peak (in pixels)')
parser.add_argument('-w',
'--width',
default=3,
help='width of masked region (in frames)')
parser.add_argument('-o',
'--overwrite',
action='store_true',
help='overwrite existing transforms')
parser.add_argument('-q',
'--queue',
action='store_true',
help='add to server task queue')
args = parser.parse_args()
for entry in args.entries:
reduce = NXReduce(entry,
args.directory,
transform=True,
mask=args.mask,
Qh=args.qh,
Qk=args.qk,
Ql=args.ql,
radius=args.radius,
width=args.width,
overwrite=args.overwrite)
if args.mask:
if args.queue:
reduce.queue()
else:
reduce.nxmasked_transform()
else:
if args.queue:
reduce.queue()
else:
reduce.nxtransform()
def main():
parser = argparse.ArgumentParser(description="Perform CCTW transform")
parser.add_argument('-d',
'--directory',
required=True,
help='scan directory')
parser.add_argument('-e',
'--entries',
nargs='+',
help='names of entries to be processed')
parser.add_argument('-qh', nargs=3, help='Qh - min, step, max')
parser.add_argument('-qk', nargs=3, help='Qk - min, step, max')
parser.add_argument('-ql', nargs=3, help='Ql - min, step, max')
parser.add_argument('-R',
'--regular',
action='store_true',
help='perform regular transform')
parser.add_argument('-M',
'--mask',
action='store_true',
help='perform transform with 3D mask')
parser.add_argument('-o',
'--overwrite',
action='store_true',
help='overwrite existing transforms')
parser.add_argument('-q',
'--queue',
action='store_true',
help='add to server task queue')
args = parser.parse_args()
if args.entries:
entries = args.entries
else:
entries = NXMultiReduce(args.directory).entries
for entry in entries:
reduce = NXReduce(entry,
args.directory,
transform=True,
Qh=args.qh,
Qk=args.qk,
Ql=args.ql,
regular=args.regular,
mask=args.mask,
overwrite=args.overwrite)
if args.queue:
reduce.queue('nxtransform', args)
else:
if reduce.regular:
reduce.nxtransform()
if reduce.mask:
reduce.nxtransform(mask=True)
def main():
parser = argparse.ArgumentParser(
description="Perform CCTW transform")
parser.add_argument('-d', '--directory', required=True,
help='scan directory')
parser.add_argument('-e', '--entries', default=['f1', 'f2', 'f3'],
nargs='+', help='names of entries to be processed')
parser.add_argument('-m', '--mask', action='store_true', help='use 3D mask')
parser.add_argument('-qh', nargs=3, help='Qh - min, step, max')
parser.add_argument('-qk', nargs=3, help='Qk - min, step, max')
parser.add_argument('-ql', nargs=3, help='Ql - min, step, max')
parser.add_argument('-r', '--radius', default=200,
help='radius of mask around each peak (in pixels)')
parser.add_argument('-w', '--width', default=3,
help='width of masked region (in frames)')
parser.add_argument('-o', '--overwrite', action='store_true',
help='overwrite existing transforms')
parser.add_argument('-q', '--queue', action='store_true',
help='add to server task queue')
args = parser.parse_args()
for entry in args.entries:
reduce = NXReduce(entry, args.directory, transform=True, mask=args.mask,
Qh=args.qh, Qk=args.qk, Ql=args.ql,
radius=args.radius, width=args.width,
overwrite=args.overwrite)
if args.mask:
if args.queue:
reduce.queue()
else:
reduce.nxmasked_transform()
else:
if args.queue:
reduce.queue()
else:
reduce.nxtransform()