def test_valid_sac_from_minimal_existing_sac_header(self):
"""
An incomplete manually-produced SAC header should still produce a
valid SAC file, including values from the ObsPy header. Issue 1204.
"""
tr = Trace(np.arange(100))
t = UTCDateTime()
tr.stats.starttime = t
tr.stats.station = 'AAA'
tr.stats.network = 'XX'
tr.stats.channel = 'BHZ'
tr.stats.location = '00'
tr.stats.sac = AttribDict()
tr.stats.sac.iztype = 9
tr.stats.sac.nvhdr = 6
tr.stats.sac.leven = 1
tr.stats.sac.lovrok = 1
tr.stats.sac.iftype = 1
tr.stats.sac.stla = 1.
tr.stats.sac.stlo = 2.
with NamedTemporaryFile() as tf:
tempfile = tf.name
with warnings.catch_warnings(record=True) as w:
warnings.simplefilter('always')
tr.write(tempfile, format='SAC')
self.assertEqual(len(w), 1)
self.assertIn('reftime', str(w[-1].message))
tr1 = read(tempfile)[0]
# starttime made its way to SAC file
nztimes, microsecond = utcdatetime_to_sac_nztimes(t)
self.assertEqual(tr1.stats.sac.nzyear, nztimes['nzyear'])
self.assertEqual(tr1.stats.sac.nzjday, nztimes['nzjday'])
self.assertEqual(tr1.stats.sac.nzhour, nztimes['nzhour'])
self.assertEqual(tr1.stats.sac.nzmin, nztimes['nzmin'])
self.assertEqual(tr1.stats.sac.nzsec, nztimes['nzsec'])
self.assertEqual(tr1.stats.sac.nzmsec, nztimes['nzmsec'])
self.assertEqual(tr1.stats.sac.kstnm, 'AAA')
self.assertEqual(tr1.stats.sac.knetwk, 'XX')
self.assertEqual(tr1.stats.sac.kcmpnm, 'BHZ')
self.assertEqual(tr1.stats.sac.khole, '00')
self.assertEqual(tr1.stats.sac.iztype, 9)
self.assertEqual(tr1.stats.sac.nvhdr, 6)
self.assertEqual(tr1.stats.sac.leven, 1)
self.assertEqual(tr1.stats.sac.lovrok, 1)
self.assertEqual(tr1.stats.sac.iftype, 1)
self.assertEqual(tr1.stats.sac.stla, 1.0)
self.assertEqual(tr1.stats.sac.stlo, 2.0)
def test_valid_sac_from_minimal_existing_sac_header(self):
"""
An incomplete manually-produced SAC header should still produce a
valid SAC file, including values from the ObsPy header. Issue 1204.
"""
tr = Trace(np.arange(100))
t = UTCDateTime()
tr.stats.starttime = t
tr.stats.station = 'AAA'
tr.stats.network = 'XX'
tr.stats.channel = 'BHZ'
tr.stats.location = '00'
tr.stats.sac = AttribDict()
tr.stats.sac.iztype = 9
tr.stats.sac.nvhdr = 6
tr.stats.sac.leven = 1
tr.stats.sac.lovrok = 1
tr.stats.sac.iftype = 1
tr.stats.sac.stla = 1.
tr.stats.sac.stlo = 2.
with NamedTemporaryFile() as tf:
tempfile = tf.name
with warnings.catch_warnings(record=True) as w:
warnings.simplefilter('always')
tr.write(tempfile, format='SAC')
self.assertEqual(len(w), 1)
self.assertIn('reftime', str(w[-1].message))
tr1 = read(tempfile)[0]
# starttime made its way to SAC file
nztimes, microsecond = utcdatetime_to_sac_nztimes(t)
self.assertEqual(tr1.stats.sac.nzyear, nztimes['nzyear'])
self.assertEqual(tr1.stats.sac.nzjday, nztimes['nzjday'])
self.assertEqual(tr1.stats.sac.nzhour, nztimes['nzhour'])
self.assertEqual(tr1.stats.sac.nzmin, nztimes['nzmin'])
self.assertEqual(tr1.stats.sac.nzsec, nztimes['nzsec'])
self.assertEqual(tr1.stats.sac.nzmsec, nztimes['nzmsec'])
self.assertEqual(tr1.stats.sac.kstnm, 'AAA')
self.assertEqual(tr1.stats.sac.knetwk, 'XX')
self.assertEqual(tr1.stats.sac.kcmpnm, 'BHZ')
self.assertEqual(tr1.stats.sac.khole, '00')
self.assertEqual(tr1.stats.sac.iztype, 9)
self.assertEqual(tr1.stats.sac.nvhdr, 6)
self.assertEqual(tr1.stats.sac.leven, 1)
self.assertEqual(tr1.stats.sac.lovrok, 1)
self.assertEqual(tr1.stats.sac.iftype, 1)
self.assertEqual(tr1.stats.sac.stla, 1.0)
self.assertEqual(tr1.stats.sac.stlo, 2.0)
def _validate_and_write_waveforms(
st, starttime, endtime, scale, source, receiver, db, label, format
):
if not label:
label = ""
else:
label += "_"
for tr in st:
# Half the filesize but definitely sufficiently accurate.
tr.data = np.require(tr.data, dtype=np.float32)
if scale != 1.0:
for tr in st:
tr.data *= scale
# Sanity checks. Raise internal server errors in case something fails.
# This should not happen and should have been caught before.
if endtime > st[0].stats.endtime:
msg = (
"Endtime larger than the extracted endtime: endtime=%s, "
"largest db endtime=%s"
% (
_format_utc_datetime(endtime),
_format_utc_datetime(st[0].stats.endtime),
)
)
return tornado.web.HTTPError(500, log_message=msg, reason=msg), None
if starttime < st[0].stats.starttime - 3600.0:
msg = (
"Starttime more than one hour before the starttime of the "
"seismograms."
)
return tornado.web.HTTPError(500, log_message=msg, reason=msg), None
if isinstance(source, FiniteSource):
mu = None
else:
mu = st[0].stats.instaseis.mu
# Trim, potentially pad with zeroes.
st.trim(starttime, endtime, pad=True, fill_value=0.0, nearest_sample=False)
# Checked in another function and just a sanity check.
assert format in ("miniseed", "saczip")
if format == "miniseed":
with io.BytesIO() as fh:
st.write(fh, format="mseed")
fh.seek(0, 0)
binary_data = fh.read()
return binary_data, mu
# Write a number of SAC files into an archive.
elif format == "saczip":
byte_strings = []
for tr in st:
# Write SAC headers.
tr.stats.sac = obspy.core.AttribDict()
# Write WGS84 coordinates to the SAC files.
tr.stats.sac.stla = geocentric_to_elliptic_latitude(
receiver.latitude
)
tr.stats.sac.stlo = receiver.longitude
tr.stats.sac.stdp = receiver.depth_in_m
tr.stats.sac.stel = 0.0
if isinstance(source, FiniteSource):
tr.stats.sac.evla = geocentric_to_elliptic_latitude(
source.hypocenter_latitude
)
tr.stats.sac.evlo = source.hypocenter_longitude
tr.stats.sac.evdp = source.hypocenter_depth_in_m
# Force source has no magnitude.
if not isinstance(source, ForceSource):
tr.stats.sac.mag = source.moment_magnitude
src_lat = source.hypocenter_latitude
src_lng = source.hypocenter_longitude
else:
tr.stats.sac.evla = geocentric_to_elliptic_latitude(
source.latitude
)
tr.stats.sac.evlo = source.longitude
tr.stats.sac.evdp = source.depth_in_m
# Force source has no magnitude.
if not isinstance(source, ForceSource):
tr.stats.sac.mag = source.moment_magnitude
src_lat = source.latitude
src_lng = source.longitude
# Thats what SPECFEM uses for a moment magnitude....
tr.stats.sac.imagtyp = 55
# The event origin time relative to the reference which I'll
# just assume to be the starttime here?
tr.stats.sac.o = source.origin_time - starttime
# Sac coordinates are elliptical thus it only makes sense to
# have elliptical distances.
dist_in_m, az, baz = gps2dist_azimuth(
lat1=tr.stats.sac.evla,
lon1=tr.stats.sac.evlo,
lat2=tr.stats.sac.stla,
lon2=tr.stats.sac.stlo,
)
tr.stats.sac.dist = dist_in_m / 1000.0
tr.stats.sac.az = az
tr.stats.sac.baz = baz
# XXX: Is this correct? Maybe better use some function in
# geographiclib?
tr.stats.sac.gcarc = locations2degrees(
lat1=src_lat,
long1=src_lng,
lat2=receiver.latitude,
long2=receiver.longitude,
)
# Set two more headers. See #45.
tr.stats.sac.lpspol = 1
tr.stats.sac.lcalda = 0
# Add cmpinc and cmpaz headers.
#
# From the SAC format manual:
# CMPAZ: Component azimuth (degrees clockwise from north).
# CMPINC: Component incident angle (degrees from vertical).
#
# I guess "degrees from vertical" means degrees from vertical up.
# So the vertical channel would have a CMPINC of 0 and all
# others a CMPINC of 90. This is different from the dip used in
# SEED.
_c = tr.stats.channel[-1]
# Special case handling for the green's function route. Don't
# assign it here as we don't operate in geographical coordinates.
if len(st) == 10:
pass
elif _c == "Z":
tr.stats.sac.cmpinc = 0.0
# Zero seems reasonable.
tr.stats.sac.cmpaz = 0.0
# Explicitly handle the other cases to not run into surprises.
elif _c in ["E", "N", "R", "T"]:
tr.stats.sac.cmpinc = 90.0
if _c == "E":
tr.stats.sac.cmpaz = 90.0
elif _c == "N":
tr.stats.sac.cmpaz = 0.0
elif _c == "R":
tr.stats.sac.cmpaz = (baz - 180.0) % 360.0
elif _c == "T":
tr.stats.sac.cmpaz = (baz - 90.0) % 360.0
# Cannot really happen
else: # pragma: no cover
raise NotImplementedError
else: # pragma: no cover
raise NotImplementedError
# Some provenance.
tr.stats.sac.kuser0 = "InstSeis"
tr.stats.sac.kuser1 = db.info.velocity_model[:8]
tr.stats.sac.user0 = scale
# Prefix version numbers to identify them at a glance.
tr.stats.sac.kt7 = "A" + db.info.axisem_version[:7]
tr.stats.sac.kt8 = "I" + __version__[:7]
# Times have to be set by hand.
t, _ = utcdatetime_to_sac_nztimes(tr.stats.starttime)
for key, value in t.items():
tr.stats.sac[key] = value
with io.BytesIO() as temp:
tr.write(temp, format="sac")
temp.seek(0, 0)
filename = "%s%s.sac" % (label, tr.id)
byte_strings.append((filename, temp.read()))
return byte_strings, mu
def _validate_and_write_waveforms(st, callback, starttime, endtime, scale,
source, receiver, db, label, format):
if not label:
label = ""
else:
label += "_"
for tr in st:
# Half the filesize but definitely sufficiently accurate.
tr.data = np.require(tr.data, dtype=np.float32)
if scale != 1.0:
for tr in st:
tr.data *= scale
# Sanity checks. Raise internal server errors in case something fails.
# This should not happen and should have been caught before.
if endtime > st[0].stats.endtime:
msg = ("Endtime larger than the extracted endtime: endtime=%s, "
"largest db endtime=%s" % (
_format_utc_datetime(endtime),
_format_utc_datetime(st[0].stats.endtime)))
callback((tornado.web.HTTPError(500, log_message=msg, reason=msg),
None))
return
if starttime < st[0].stats.starttime - 3600.0:
msg = ("Starttime more than one hour before the starttime of the "
"seismograms.")
callback((tornado.web.HTTPError(500, log_message=msg, reason=msg),
None))
return
if isinstance(source, FiniteSource):
mu = None
else:
mu = st[0].stats.instaseis.mu
# Trim, potentially pad with zeroes.
st.trim(starttime, endtime, pad=True, fill_value=0.0, nearest_sample=False)
# Checked in another function and just a sanity check.
assert format in ("miniseed", "saczip")
if format == "miniseed":
with io.BytesIO() as fh:
st.write(fh, format="mseed")
fh.seek(0, 0)
binary_data = fh.read()
callback((binary_data, mu))
# Write a number of SAC files into an archive.
elif format == "saczip":
byte_strings = []
for tr in st:
# Write SAC headers.
tr.stats.sac = obspy.core.AttribDict()
# Write WGS84 coordinates to the SAC files.
tr.stats.sac.stla = geocentric_to_elliptic_latitude(
receiver.latitude)
tr.stats.sac.stlo = receiver.longitude
tr.stats.sac.stdp = receiver.depth_in_m
tr.stats.sac.stel = 0.0
if isinstance(source, FiniteSource):
tr.stats.sac.evla = geocentric_to_elliptic_latitude(
source.hypocenter_latitude)
tr.stats.sac.evlo = source.hypocenter_longitude
tr.stats.sac.evdp = source.hypocenter_depth_in_m
# Force source has no magnitude.
if not isinstance(source, ForceSource):
tr.stats.sac.mag = source.moment_magnitude
src_lat = source.hypocenter_latitude
src_lng = source.hypocenter_longitude
else:
tr.stats.sac.evla = geocentric_to_elliptic_latitude(
source.latitude)
tr.stats.sac.evlo = source.longitude
tr.stats.sac.evdp = source.depth_in_m
# Force source has no magnitude.
if not isinstance(source, ForceSource):
tr.stats.sac.mag = source.moment_magnitude
src_lat = source.latitude
src_lng = source.longitude
# Thats what SPECFEM uses for a moment magnitude....
tr.stats.sac.imagtyp = 55
# The event origin time relative to the reference which I'll
# just assume to be the starttime here?
tr.stats.sac.o = source.origin_time - starttime
# Sac coordinates are elliptical thus it only makes sense to
# have elliptical distances.
dist_in_m, az, baz = gps2dist_azimuth(
lat1=tr.stats.sac.evla,
lon1=tr.stats.sac.evlo,
lat2=tr.stats.sac.stla,
lon2=tr.stats.sac.stlo)
tr.stats.sac.dist = dist_in_m / 1000.0
tr.stats.sac.az = az
tr.stats.sac.baz = baz
# XXX: Is this correct? Maybe better use some function in
# geographiclib?
tr.stats.sac.gcarc = locations2degrees(
lat1=src_lat,
long1=src_lng,
lat2=receiver.latitude,
long2=receiver.longitude)
# Set two more headers. See #45.
tr.stats.sac.lpspol = 1
tr.stats.sac.lcalda = 0
# Some provenance.
tr.stats.sac.kuser0 = "InstSeis"
tr.stats.sac.kuser1 = db.info.velocity_model[:8]
tr.stats.sac.user0 = scale
# Prefix version numbers to identify them at a glance.
tr.stats.sac.kt7 = "A" + db.info.axisem_version[:7]
tr.stats.sac.kt8 = "I" + __version__[:7]
# Times have to be set by hand.
t, _ = utcdatetime_to_sac_nztimes(tr.stats.starttime)
for key, value in t.items():
tr.stats.sac[key] = value
with io.BytesIO() as temp:
tr.write(temp, format="sac")
temp.seek(0, 0)
filename = "%s%s.sac" % (label, tr.id)
byte_strings.append((filename, temp.read()))
callback((byte_strings, mu))
