Example #1
0
            Z = float(f[2:])
        if f[:3] == 'it=':
            it = int(f[3:])

    Ef = float(Ef)
    print 'Z =', Z, 'Ef =', Ef, 'it =', it
    testname = 'data/sim/denssim-Z=%g-N=500-Nfa=3.6-Ef=%g-it=%d.npz' %(Z,Ef,it+1)
    if os.path.isfile(testname):
        sys.exit('THIS IS NOT THE FINAL ITERATION!')
        
    Emax = Emax0
    Emin = Emin0

    Espace0 = np.linspace(Emin,Emax,N0)
    Espace = np.array(Espace0)
    dos0 = odedirac.doscalc(Espace0, r, U, mlist)
    dos = np.array(dos0)
    ipeak = dos0[itest,:].argmax()

    while (Emax - Emin)/N0 > threshold:
        if ipeak > 0:
            Emin = Espace[ipeak - 1]
        else: Emin = Espace[0]
        if ipeak < len(Espace) - 1:
            Emax = Espace[ipeak + 1]
        else: Emax = Espace[-1]
        Espace = np.linspace(Emin,Emax,N0)
        dos = odedirac.doscalc(Espace, r, U, mlist)
        ipeak = dos[itest,:].argmax()

    if abs(Emin-Emin0)<1e-7 or abs(Emax-Emax0)<1e-7:
Example #2
0
    for i in range(0, len(its)):
        Epeak = peaks[i]
        Ef = Efs[i]
        it = its[i]
        simdata = np.load(
            'data/sim/denssim-Z=%g-N=500-Nfa=3.6-Ef=%g-it=%d.npz' %
            (Z, Ef, it))
        U = simdata['U']
        r = simdata['r']
        itest = abs(r - rtest).argmin()
        height = heights[i][itest]

        normE = np.linspace(0.1, 4.0, 1000)
        trueE = normE * Epeak
        normdos = odedirac.doscalc(trueE, r, U, mlist)[itest, :] / height

        print 'Z =', Z, 'Ef =', Ef

        bnds = []
        bnds.append((0.9, 1.1))  # peak amplitude
        bnds.append((0.9, 1.1))  # peak position
        bnds.append((0.1, 1.5))  # peak width
        bnds.append((0.2, 1.2))  # envelope E scaling
        bnds.append((0.01, 2.0 * normdos[-1]))  # bg height
        bnds.append((0.5, 5.0))  # bg E scaling
        bnds = tuple(bnds)

        start = [[1.0, 1.0, 1.0, 0.5, 1.5 * normdos[-1], 1.5]]

        fit, params = lfit.peakfit(normE, normdos, 1, bnds, start)
Example #3
0
    hts = []
    hfs = []

    for i in range(0, len(its)):
        Epeak = peaks[i]
        Ef = Efs[i]
        it = its[i]
        simdata = np.load("data/sim/denssim-Z=%g-N=500-Nfa=3.6-Ef=%g-it=%d.npz" % (Z, Ef, it))
        U = simdata["U"]
        r = simdata["r"]
        itest = abs(r - rtest).argmin()
        height = heights[i][itest]

        normE = np.linspace(0.1, 4.0, 1000)
        trueE = normE * Epeak
        normdos = odedirac.doscalc(trueE, r, U, mlist)[itest, :] / height

        print "Z =", Z, "Ef =", Ef

        bnds = []
        bnds.append((0.9, 1.1))  # peak amplitude
        bnds.append((0.9, 1.1))  # peak position
        bnds.append((0.1, 1.5))  # peak width
        bnds.append((0.2, 1.2))  # envelope E scaling
        bnds.append((0.01, 2.0 * normdos[-1]))  # bg height
        bnds.append((0.5, 5.0))  # bg E scaling
        bnds = tuple(bnds)

        start = [[1.0, 1.0, 1.0, 0.5, 1.5 * normdos[-1], 1.5]]

        fit, params = lfit.peakfit(normE, normdos, 1, bnds, start)