config = get_config('./db.conf',time_series)
outdir = config.outdir
psql_connect = '%s dbname=%s' % (config.psql_connect, config.dbname)
R = parse_stream(config.resolver)
NAMESPACE='http://demi.whoi.edu/mvco/'
feed = IfcbFeed(psql_connect)
start=strptime('2005-01-01T00:00:00Z',ISO_8601_FORMAT);
end=strptime('2014-01-01T00:00:00Z',ISO_8601_FORMAT);
with xa(psql_connect) as (c, db):
bin_lids = list(feed.between(start,end))
N=8
pids = []
for n in range(N):
pid = os.fork()
if pid == 0:
outfile = os.path.join(outdir,'scores_%d.csv' % n)
with open(outfile,'w') as of:
for bin_lid in bin_lids[n::N]:
bin_pid = NAMESPACE + bin_lid
print bin_pid
hit = R['class_scores'].resolve(pid=bin_pid)
if hit is not None:
class_mat = load_class_scores(hit.value)
R = parse_stream(config.resolver)
NAMESPACE='http://demi.whoi.edu/mvco/'
feed = IfcbFeed(psql_connect)
start=strptime('2005-01-01T00:00:00Z',ISO_8601_FORMAT);
end=strptime('2014-01-01T00:00:00Z',ISO_8601_FORMAT);
s = 'select count(*) from autoclass where bin_lid=%s'
q = 'insert into autoclass (bin_lid, class_label, roinums, scores) values (%s, %s, %s, %s)'
with xa(psql_connect) as (c, db):
n = 0
for bin_lid in feed.between(start,end):
bin_pid = NAMESPACE + bin_lid
db.execute(s,(bin_lid,))
count = db.fetchone()[0]
if count == 0:
print 'indexing %s' % bin_pid
hit = R['class_scores'].resolve(pid=bin_pid)
if hit is not None:
class_mat = load_class_scores(hit.value)
roinums = {}
scores = {}
for roinum, label, score in class_scores_mat2class_label_score(class_mat):
if not label in roinums:
roinums[label] = []
