def get_polygons_from_rois(conn, image):
"""
Returns a list of (x, y, width, height), one for each ROI with rectangle shape
@param conn: BlitzGateway connection
@param imageId: Image ID
"""
# Using the underlying ROI service & omero.model objects (no ROI support in Blitz Gateway yet)
roiService = conn.getRoiService()
imageId = image.getId()
result = roiService.findByImage(imageId, None)
updateService = conn.getUpdateService()
polygons = []
rects = []
for roi in result.rois:
# go through all the shapes of the ROI
roi_id = roi.getId().getValue()
for shape in roi.copyShapes():
if shape.__class__.__name__ == 'PolygonI':
poly = PolygonData(shape)
rect = poly.getBoundingRectangle()
points = poly.fromPoints("points")
print 'points', type(points)
print 'rect', rect
x = rect[0][0]
y = rect[0][1]
w = rect[1][0] - rect[0][0]
h = rect[1][1] - rect[0][1]
rects.append((x, y, w, h, roi_id))
polygons.append(poly)
break
return rects, polygons
def get_polygons_from_rois(conn, image):
"""
Returns a list of (x, y, width, height), one for each ROI with rectangle shape
@param conn: BlitzGateway connection
@param imageId: Image ID
"""
# Using the underlying ROI service & omero.model objects (no ROI support in Blitz Gateway yet)
roiService = conn.getRoiService()
imageId = image.getId()
result = roiService.findByImage(imageId, None)
updateService = conn.getUpdateService()
polygons = []
rects = []
for roi in result.rois:
# go through all the shapes of the ROI
roi_id = roi.getId().getValue()
for shape in roi.copyShapes():
if shape.__class__.__name__ == 'PolygonI':
poly = PolygonData(shape)
rect = poly.getBoundingRectangle()
points = poly.fromPoints("points")
print 'points',type(points)
print 'rect',rect
x = rect[0][0]
y = rect[0][1]
w = rect[1][0] - rect[0][0]
h = rect[1][1] - rect[0][1]
rects.append( (x,y,w,h,roi_id) )
polygons.append(poly)
break
return rects,polygons
