def add(self, args):
email = args.email
login = args.username
first = args.firstname
middle = args.middlename
last = args.lastname
inst = args.institution
pasw = args.userpassword
import omero
from omero.rtypes import rstring
from omero_model_ExperimenterI import ExperimenterI as Exp
from omero_model_ExperimenterGroupI import ExperimenterGroupI as Grp
c = self.ctx.conn(args)
p = c.ic.getProperties()
e = Exp()
e.omeName = rstring(login)
e.firstName = rstring(first)
e.lastName = rstring(last)
e.middleName = rstring(middle)
e.email = rstring(email)
e.institution = rstring(inst)
admin = c.getSession().getAdminService()
try:
usr = admin.lookupExperimenter(login)
if usr:
if args.ignore_existing:
self.ctx.out("User exists: %s (id=%s)" % (login, usr.id.val))
return
else:
self.ctx.die(3, "User exists: %s (id=%s)" % (login, usr.id.val))
except omero.ApiUsageException, aue:
pass # Apparently no such user exists
def testGroupOwners(self):
# this is the test of creating private group and updating it
# including changes in #1434
uuid = self.uuid()
admin = self.root.sf.getAdminService()
# create group1
new_gr1 = ExperimenterGroupI()
new_gr1.name = rstring("group1_%s" % uuid)
new_gr1.ldap = rbool(False)
p = PermissionsI()
p.setUserRead(True)
p.setUserWrite(True)
p.setGroupRead(True)
p.setGroupAnnotate(False)
p.setGroupWrite(False)
p.setWorldRead(False)
p.setWorldAnnotate(False)
p.setWorldWrite(False)
new_gr1.details.permissions = p
g1_id = admin.createGroup(new_gr1)
gr1 = admin.getGroup(g1_id)
# create user1
new_exp1 = ExperimenterI()
new_exp1.omeName = rstring("user1_%s" % uuid)
new_exp1.firstName = rstring("New")
new_exp1.lastName = rstring("Test")
new_exp1.ldap = rbool(False)
new_exp1.email = rstring("*****@*****.**")
uuid = self.uuid()
uuidGroup = ExperimenterGroupI()
uuidGroup.name = rstring(uuid)
uuidGroup.ldap = rbool(False)
uuidGroupId = admin.createGroup(uuidGroup)
uuidGroup = ExperimenterGroupI(uuidGroupId, False)
listOfGroups = list()
listOfGroups.append(admin.lookupGroup("user"))
eid1 = admin.createExperimenterWithPassword(
new_exp1, rstring("ome"), uuidGroup, listOfGroups)
exp1 = admin.getExperimenter(eid1)
# set owner of the group (user is not a member of)
admin.addGroupOwners(gr1, [exp1])
# chech if is the leader
leaderOfGroups = admin.getLeaderOfGroupIds(exp1)
assert gr1.id.val in leaderOfGroups
# remove group owner
admin.removeGroupOwners(gr1, [exp1])
# chech if no longer is the leader
leaderOfGroups = admin.getLeaderOfGroupIds(exp1)
assert gr1.id.val not in leaderOfGroups
"""
def testGroupOwners(self):
# this is the test of creating private group and updating it
# including changes in #1434
uuid = self.uuid()
admin = self.root.sf.getAdminService()
# create group1
new_gr1 = ExperimenterGroupI()
new_gr1.name = rstring("group1_%s" % uuid)
new_gr1.ldap = rbool(False)
p = PermissionsI()
p.setUserRead(True)
p.setUserWrite(True)
p.setGroupRead(True)
p.setGroupAnnotate(False)
p.setGroupWrite(False)
p.setWorldRead(False)
p.setWorldAnnotate(False)
p.setWorldWrite(False)
new_gr1.details.permissions = p
g1_id = admin.createGroup(new_gr1)
gr1 = admin.getGroup(g1_id)
# create user1
new_exp1 = ExperimenterI()
new_exp1.omeName = rstring("user1_%s" % uuid)
new_exp1.firstName = rstring("New")
new_exp1.lastName = rstring("Test")
new_exp1.ldap = rbool(False)
new_exp1.email = rstring("*****@*****.**")
uuid = self.uuid()
uuidGroup = ExperimenterGroupI()
uuidGroup.name = rstring(uuid)
uuidGroup.ldap = rbool(False)
uuidGroupId = admin.createGroup(uuidGroup)
uuidGroup = ExperimenterGroupI(uuidGroupId, False)
listOfGroups = list()
listOfGroups.append(admin.lookupGroup("user"))
eid1 = admin.createExperimenterWithPassword(new_exp1, rstring("ome"),
uuidGroup, listOfGroups)
exp1 = admin.getExperimenter(eid1)
# set owner of the group (user is not a member of)
admin.addGroupOwners(gr1, [exp1])
# chech if is the leader
leaderOfGroups = admin.getLeaderOfGroupIds(exp1)
assert gr1.id.val in leaderOfGroups
# remove group owner
admin.removeGroupOwners(gr1, [exp1])
# chech if no longer is the leader
leaderOfGroups = admin.getLeaderOfGroupIds(exp1)
assert gr1.id.val not in leaderOfGroups
"""
def test1109(self):
uuid = self.uuid()
admin = self.root.sf.getAdminService()
# Replace defaultGroup with something new
defaultGroup = self.new_group()
# create data
#group1
new_gr1 = ExperimenterGroupI()
new_gr1.name = rstring("group1_%s" % uuid)
gid = admin.createGroup(new_gr1)
#new user1
new_exp = ExperimenterI()
new_exp.omeName = rstring("user_%s" % uuid)
new_exp.firstName = rstring("New")
new_exp.lastName = rstring("Test")
new_exp.email = rstring("*****@*****.**")
listOfGroups = list()
# defaultGroup = admin.lookupGroup("default") Removed in 4.2
listOfGroups.append(admin.getGroup(gid))
listOfGroups.append(admin.lookupGroup("user"))
eid = admin.createExperimenter(new_exp, defaultGroup, listOfGroups)
#test
exp = admin.getExperimenter(eid)
#print "exp: ", exp.id.val, " his default group is: ", admin.getDefaultGroup(exp.id.val).id.val
gr1 = admin.getGroup(2)
indefault = admin.containedExperimenters(gr1.id.val)
# print "members of group %s %i" % (gr1.name.val, gr1.id.val)
for m in indefault:
if m.id.val == exp.id.val:
self.assert_(m.copyGroupExperimenterMap()[0].parent.id.val ==
admin.getDefaultGroup(exp.id.val).id.val)
# print "exp: id=", m.id.val, "; GEM[0]: ", type(m.copyGroupExperimenterMap()[0].parent), m.copyGroupExperimenterMap()[0].parent.id.val
gr2 = admin.getGroup(gid)
members2 = admin.containedExperimenters(gr2.id.val)
# print "members of group %s %i" % (gr2.name.val, gr2.id.val)
for m in members2:
if m.id.val == exp.id.val:
copied_id = m.copyGroupExperimenterMap()[0].parent.id.val
got_id = admin.getDefaultGroup(exp.id.val).id.val
contained = admin.containedGroups(m.id.val)
self.assertEquals(copied_id, got_id,\
"""
%s != %s. Groups for experimenter %s = %s (graph) or %s (contained)
""" % ( copied_id, got_id, exp.id.val, [ x.parent.id.val for x in m.copyGroupExperimenterMap() ], [ y.id.val for y in contained ] ))
def test1109(self):
uuid = self.uuid()
admin = self.root.sf.getAdminService()
# Replace defaultGroup with something new
defaultGroup = self.new_group()
# create data
#group1
new_gr1 = ExperimenterGroupI()
new_gr1.name = rstring("group1_%s" % uuid)
gid = admin.createGroup(new_gr1)
#new user1
new_exp = ExperimenterI()
new_exp.omeName = rstring("user_%s" % uuid)
new_exp.firstName = rstring("New")
new_exp.lastName = rstring("Test")
new_exp.email = rstring("*****@*****.**")
listOfGroups = list()
# defaultGroup = admin.lookupGroup("default") Removed in 4.2
listOfGroups.append(admin.getGroup(gid))
listOfGroups.append(admin.lookupGroup("user"))
eid = admin.createExperimenter(new_exp, defaultGroup, listOfGroups)
#test
exp = admin.getExperimenter(eid)
#print "exp: ", exp.id.val, " his default group is: ", admin.getDefaultGroup(exp.id.val).id.val
gr1 = admin.getGroup(2)
indefault = admin.containedExperimenters(gr1.id.val)
# print "members of group %s %i" % (gr1.name.val, gr1.id.val)
for m in indefault:
if m.id.val == exp.id.val:
assert m.copyGroupExperimenterMap()[0].parent.id.val == admin.getDefaultGroup(exp.id.val).id.val
# print "exp: id=", m.id.val, "; GEM[0]: ", type(m.copyGroupExperimenterMap()[0].parent), m.copyGroupExperimenterMap()[0].parent.id.val
gr2 = admin.getGroup(gid)
members2 = admin.containedExperimenters(gr2.id.val)
# print "members of group %s %i" % (gr2.name.val, gr2.id.val)
for m in members2:
if m.id.val == exp.id.val:
copied_id = m.copyGroupExperimenterMap()[0].parent.id.val
got_id = admin.getDefaultGroup(exp.id.val).id.val
contained = admin.containedGroups(m.id.val)
assert copied_id == got_id,\
"""
%s != %s. Groups for experimenter %s = %s (graph) or %s (contained)
""" % ( copied_id, got_id, exp.id.val, [ x.parent.id.val for x in m.copyGroupExperimenterMap() ], [ y.id.val for y in contained ] )
def add(self, args):
email = args.email
login = args.username
first = args.firstname
middle = args.middlename
last = args.lastname
inst = args.institution
pasw = args.userpassword
import omero
from omero.rtypes import rstring
from omero_model_ExperimenterI import ExperimenterI as Exp
from omero_model_ExperimenterGroupI import ExperimenterGroupI as Grp
c = self.ctx.conn(args)
p = c.ic.getProperties()
e = Exp()
e.omeName = rstring(login)
e.firstName = rstring(first)
e.lastName = rstring(last)
e.middleName = rstring(middle)
e.email = rstring(email)
e.institution = rstring(inst)
admin = c.getSession().getAdminService()
try:
usr = admin.lookupExperimenter(login)
if usr:
if args.ignore_existing:
self.ctx.out("User exists: %s (id=%s)" %
(login, usr.id.val))
return
else:
self.ctx.die(
3, "User exists: %s (id=%s)" % (login, usr.id.val))
except omero.ApiUsageException, aue:
pass # Apparently no such user exists
def testThumbs(self):
# root session is root.sf
uuid = self.root.sf.getAdminService().getEventContext().sessionUuid
admin = self.root.sf.getAdminService()
group1name = "private_%s" % uuid
group2name = "read-only_%s" % uuid
group3name = "collaborative_%s" % uuid
ownerName = "owner_%s" % uuid
user1name = "user1_%s" % uuid
user2name = "user2_%s" % uuid
### create three users in 3 groups
listOfGroups = list()
listOfGroups.append(admin.lookupGroup(
"user")) # all users need to be in 'user' group to do anything!
#group1 - private
new_gr1 = ExperimenterGroupI()
new_gr1.name = rstring(group1name)
p = PermissionsI('rw----')
new_gr1.details.permissions = p
gid = admin.createGroup(new_gr1)
privateGroup = admin.getGroup(gid)
self.assertEquals('rw----', str(privateGroup.details.permissions))
listOfGroups.append(privateGroup)
#group2 - read-only
new_gr2 = ExperimenterGroupI()
new_gr2.name = rstring(group2name)
p2 = PermissionsI('rwr---')
new_gr2.details.permissions = p2
gid2 = admin.createGroup(new_gr2)
readOnlyGroup = admin.getGroup(gid2)
self.assertEquals('rwr---', str(readOnlyGroup.details.permissions))
listOfGroups.append(readOnlyGroup)
#group3 - read-annotate
new_gr3 = ExperimenterGroupI()
new_gr3.name = rstring(group3name)
p = PermissionsI('rwra--')
new_gr3.details.permissions = p
gid3 = admin.createGroup(new_gr3)
collaborativeGroup = admin.getGroup(gid3)
self.assertEquals('rwra--',
str(collaborativeGroup.details.permissions))
listOfGroups.append(collaborativeGroup)
#new user (group owner)
owner = ExperimenterI()
owner.omeName = rstring(ownerName)
owner.firstName = rstring("Group")
owner.lastName = rstring("Owner")
owner.email = rstring("*****@*****.**")
ownerId = admin.createExperimenterWithPassword(owner, rstring("ome"),
privateGroup,
listOfGroups)
newOwner = admin.getExperimenter(ownerId)
admin.setGroupOwner(privateGroup, newOwner)
admin.setGroupOwner(readOnlyGroup, newOwner)
admin.setGroupOwner(collaborativeGroup, newOwner)
#new user1
new_exp = ExperimenterI()
new_exp.omeName = rstring(user1name)
new_exp.firstName = rstring("Will")
new_exp.lastName = rstring("Moore")
new_exp.email = rstring("*****@*****.**")
eid = admin.createExperimenterWithPassword(new_exp, rstring("ome"),
privateGroup, listOfGroups)
#new user2
new_exp2 = ExperimenterI()
new_exp2.omeName = rstring(user2name)
new_exp2.firstName = rstring("User")
new_exp2.lastName = rstring("Test2")
new_exp2.email = rstring("*****@*****.**")
eid2 = admin.createExperimenterWithPassword(new_exp2, rstring("ome"),
privateGroup, listOfGroups)
## get users
user1 = admin.getExperimenter(eid)
user2 = admin.getExperimenter(eid2)
## login as user1 (into their default group)
client_share1 = self.new_client(user=user1, password="******")
print len(client_share1.sf.activeServices())
# create image in private group
privateImageId = createTestImage(client_share1.sf)
print len(client_share1.sf.activeServices())
self.getThumbnail(
client_share1.sf, privateImageId
) # if we don't get thumbnail, test fails when another user does
print len(client_share1.sf.activeServices())
# change user into read-only group. Use object Ids for this, NOT objects from a different context
a = client_share1.sf.getAdminService()
me = a.getExperimenter(a.getEventContext().userId)
a.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid2, False))
self.set_context(client_share1, gid2)
#print a.getEventContext()
# create image and get thumbnail (in read-only group)
readOnlyImageId = createTestImage(client_share1.sf)
self.getThumbnail(client_share1.sf, readOnlyImageId)
# change user into collaborative group. Use object Ids for this, NOT objects from a different context
a.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid3, False))
self.set_context(client_share1, gid3)
# create image and get thumbnail (in collaborative group)
collaborativeImageId = createTestImage(client_share1.sf)
self.getThumbnail(client_share1.sf, collaborativeImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None,
self.getThumbnail(client_share1.sf, privateImageId))
self.assertEquals(None,
self.getThumbnail(client_share1.sf, readOnlyImageId))
# now check that the 'owner' of each group can see all 3 thumbnails.
## login as owner (into private group)
owner_client = self.new_client(user=newOwner, password="******")
self.getThumbnail(owner_client.sf, privateImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None,
self.getThumbnail(owner_client.sf, readOnlyImageId))
self.assertEquals(
None, self.getThumbnail(owner_client.sf, collaborativeImageId))
# change owner into read-only group.
o = client_share1.sf.getAdminService()
me = o.getExperimenter(o.getEventContext().userId)
o.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid2, False))
self.set_context(owner_client, gid2)
self.getThumbnail(owner_client.sf, readOnlyImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None,
self.getThumbnail(owner_client.sf, privateImageId))
self.assertEquals(
None, self.getThumbnail(owner_client.sf, collaborativeImageId))
# change owner into collaborative group.
o.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid3, False))
self.set_context(owner_client, gid3)
self.getThumbnail(owner_client.sf, collaborativeImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None,
self.getThumbnail(owner_client.sf, privateImageId))
self.assertEquals(None,
self.getThumbnail(owner_client.sf, readOnlyImageId))
# now check that the 'user2' of each group can see all thumbnails except private.
## login as user2 (into private group)
user2_client = self.new_client(user=user2, password="******")
# check that we can't get thumbnails for any images in private group
self.assertEquals(None,
self.getThumbnail(user2_client.sf, privateImageId))
self.assertEquals(None,
self.getThumbnail(user2_client.sf, readOnlyImageId))
self.assertEquals(
None, self.getThumbnail(user2_client.sf, collaborativeImageId))
# change owner into read-only group.
u = user2_client.sf.getAdminService()
me = u.getExperimenter(u.getEventContext().userId)
u.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid2, False))
self.set_context(user2_client, gid2)
self.getThumbnail(user2_client.sf, readOnlyImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None,
self.getThumbnail(user2_client.sf, privateImageId))
self.assertEquals(
None, self.getThumbnail(user2_client.sf, collaborativeImageId))
# change owner into collaborative group.
u.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid3, False))
self.set_context(user2_client, gid3)
self.getThumbnail(user2_client.sf, collaborativeImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None,
self.getThumbnail(user2_client.sf, privateImageId))
self.assertEquals(None,
self.getThumbnail(user2_client.sf, readOnlyImageId))
def add(self, args):
email = args.email
login = args.username
first = args.firstname
middle = args.middlename
last = args.lastname
inst = args.institution
pasw = args.userpassword
import omero
from omero.rtypes import rstring
from omero_model_ExperimenterI import ExperimenterI as Exp
from omero_model_ExperimenterGroupI import ExperimenterGroupI as Grp
c = self.ctx.conn(args)
e = Exp()
e.omeName = rstring(login)
e.firstName = rstring(first)
e.lastName = rstring(last)
e.middleName = rstring(middle)
e.email = rstring(email)
e.institution = rstring(inst)
# Fail-fast if a non-admin runs this command
isAdmin = self.ctx._event_context.isAdmin
if not isAdmin:
self.error_admin_only(fatal=True)
# Fail-fast if no-password is passed and the server does not accept
# empty passwords
configService = c.getSession().getConfigService()
password_required = configService.getConfigValue(
"omero.security.password_required").lower()
if args.no_password and password_required != 'false':
self.ctx.die(502, "Server does not allow user creation with empty"
" passwords")
# Check user existence
admin = c.getSession().getAdminService()
try:
usr = admin.lookupExperimenter(login)
if usr:
if args.ignore_existing:
self.ctx.out("User exists: %s (id=%s)"
% (login, usr.id.val))
return
else:
self.ctx.die(3, "User exists: %s (id=%s)"
% (login, usr.id.val))
except omero.ApiUsageException:
pass # Apparently no such user exists
groups = self.list_groups(admin, args)
roles = admin.getSecurityRoles()
groups.append(Grp(roles.userGroupId, False))
if args.admin:
groups.append(Grp(roles.systemGroupId, False))
group = groups.pop(0)
try:
if args.no_password:
id = admin.createExperimenter(e, group, groups)
self.ctx.out("Added user %s (id=%s) without password"
% (login, id))
else:
if pasw is None:
pasw = self._ask_for_password(" for your new user (%s)"
% login, strict=True)
id = admin.createExperimenterWithPassword(e, rstring(pasw),
group, groups)
self.ctx.out("Added user %s (id=%s) with password"
% (login, id))
except omero.ValidationException, ve:
# Possible, though unlikely after previous check
if self.exc.is_constraint_violation(ve):
self.ctx.die(66, "User already exists: %s" % login)
else:
self.ctx.die(67, "Unknown ValidationException: %s"
% ve.message)
def testThumbs(self):
# root session is root.sf
uuid = self.root.sf.getAdminService().getEventContext().sessionUuid
admin = self.root.sf.getAdminService()
group1name = "private_%s" % uuid
group2name = "read-only_%s" % uuid
group3name = "collaborative_%s" % uuid
ownerName = "owner_%s" % uuid
user1name = "user1_%s" % uuid
user2name = "user2_%s" % uuid
### create three users in 3 groups
listOfGroups = list()
listOfGroups.append(admin.lookupGroup("user")) # all users need to be in 'user' group to do anything!
#group1 - private
new_gr1 = ExperimenterGroupI()
new_gr1.name = rstring(group1name)
p = PermissionsI('rw----')
new_gr1.details.permissions = p
gid = admin.createGroup(new_gr1)
privateGroup = admin.getGroup(gid)
self.assertEquals('rw----', str(privateGroup.details.permissions))
listOfGroups.append(privateGroup)
#group2 - read-only
new_gr2 = ExperimenterGroupI()
new_gr2.name = rstring(group2name)
p2 = PermissionsI('rwr---')
new_gr2.details.permissions = p2
gid2 = admin.createGroup(new_gr2)
readOnlyGroup = admin.getGroup(gid2)
self.assertEquals('rwr---', str(readOnlyGroup.details.permissions))
listOfGroups.append(readOnlyGroup)
#group3 - read-annotate
new_gr3 = ExperimenterGroupI()
new_gr3.name = rstring(group3name)
p = PermissionsI('rwra--')
new_gr3.details.permissions = p
gid3 = admin.createGroup(new_gr3)
collaborativeGroup = admin.getGroup(gid3)
self.assertEquals('rwra--', str(collaborativeGroup.details.permissions))
listOfGroups.append(collaborativeGroup)
#new user (group owner)
owner = ExperimenterI()
owner.omeName = rstring(ownerName)
owner.firstName = rstring("Group")
owner.lastName = rstring("Owner")
owner.email = rstring("*****@*****.**")
ownerId = admin.createExperimenterWithPassword(owner, rstring("ome"), privateGroup, listOfGroups)
newOwner = admin.getExperimenter(ownerId)
admin.setGroupOwner(privateGroup, newOwner)
admin.setGroupOwner(readOnlyGroup, newOwner)
admin.setGroupOwner(collaborativeGroup, newOwner)
#new user1
new_exp = ExperimenterI()
new_exp.omeName = rstring(user1name)
new_exp.firstName = rstring("Will")
new_exp.lastName = rstring("Moore")
new_exp.email = rstring("*****@*****.**")
eid = admin.createExperimenterWithPassword(new_exp, rstring("ome"), privateGroup, listOfGroups)
#new user2
new_exp2 = ExperimenterI()
new_exp2.omeName = rstring(user2name)
new_exp2.firstName = rstring("User")
new_exp2.lastName = rstring("Test2")
new_exp2.email = rstring("*****@*****.**")
eid2 = admin.createExperimenterWithPassword(new_exp2, rstring("ome"), privateGroup, listOfGroups)
## get users
user1 = admin.getExperimenter(eid)
user2 = admin.getExperimenter(eid2)
## login as user1 (into their default group)
client_share1 = self.new_client(user=user1, password="******")
print len(client_share1.sf.activeServices())
# create image in private group
privateImageId = createTestImage(client_share1.sf)
print len(client_share1.sf.activeServices())
self.getThumbnail(client_share1.sf, privateImageId) # if we don't get thumbnail, test fails when another user does
print len(client_share1.sf.activeServices())
# change user into read-only group. Use object Ids for this, NOT objects from a different context
a = client_share1.sf.getAdminService()
me = a.getExperimenter(a.getEventContext().userId)
a.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid2, False))
self.set_context(client_share1, gid2)
#print a.getEventContext()
# create image and get thumbnail (in read-only group)
readOnlyImageId = createTestImage(client_share1.sf)
self.getThumbnail(client_share1.sf, readOnlyImageId)
# change user into collaborative group. Use object Ids for this, NOT objects from a different context
a.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid3, False))
self.set_context(client_share1, gid3)
# create image and get thumbnail (in collaborative group)
collaborativeImageId = createTestImage(client_share1.sf)
self.getThumbnail(client_share1.sf, collaborativeImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None, self.getThumbnail(client_share1.sf, privateImageId))
self.assertEquals(None, self.getThumbnail(client_share1.sf, readOnlyImageId))
# now check that the 'owner' of each group can see all 3 thumbnails.
## login as owner (into private group)
owner_client = self.new_client(user=newOwner, password="******")
self.getThumbnail(owner_client.sf, privateImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None, self.getThumbnail(owner_client.sf, readOnlyImageId))
self.assertEquals(None, self.getThumbnail(owner_client.sf, collaborativeImageId))
# change owner into read-only group.
o = client_share1.sf.getAdminService()
me = o.getExperimenter(o.getEventContext().userId)
o.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid2, False))
self.set_context(owner_client, gid2)
self.getThumbnail(owner_client.sf, readOnlyImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None, self.getThumbnail(owner_client.sf, privateImageId))
self.assertEquals(None, self.getThumbnail(owner_client.sf, collaborativeImageId))
# change owner into collaborative group.
o.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid3, False))
self.set_context(owner_client, gid3)
self.getThumbnail(owner_client.sf, collaborativeImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None, self.getThumbnail(owner_client.sf, privateImageId))
self.assertEquals(None, self.getThumbnail(owner_client.sf, readOnlyImageId))
# now check that the 'user2' of each group can see all thumbnails except private.
## login as user2 (into private group)
user2_client = self.new_client(user=user2, password="******")
# check that we can't get thumbnails for any images in private group
self.assertEquals(None, self.getThumbnail(user2_client.sf, privateImageId))
self.assertEquals(None, self.getThumbnail(user2_client.sf, readOnlyImageId))
self.assertEquals(None, self.getThumbnail(user2_client.sf, collaborativeImageId))
# change owner into read-only group.
u = user2_client.sf.getAdminService()
me = u.getExperimenter(u.getEventContext().userId)
u.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid2, False))
self.set_context(user2_client, gid2)
self.getThumbnail(user2_client.sf, readOnlyImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None, self.getThumbnail(user2_client.sf, privateImageId))
self.assertEquals(None, self.getThumbnail(user2_client.sf, collaborativeImageId))
# change owner into collaborative group.
u.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid3, False))
self.set_context(user2_client, gid3)
self.getThumbnail(user2_client.sf, collaborativeImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None, self.getThumbnail(user2_client.sf, privateImageId))
self.assertEquals(None, self.getThumbnail(user2_client.sf, readOnlyImageId))
def add(self, args):
email = args.email
login = args.username
first = args.firstname
middle = args.middlename
last = args.lastname
inst = args.institution
pasw = args.userpassword
import omero
from omero.rtypes import rbool, rstring
from omero_model_ExperimenterI import ExperimenterI as Exp
from omero_model_ExperimenterGroupI import ExperimenterGroupI as Grp
c = self.ctx.conn(args)
e = Exp()
e.omeName = rstring(login)
e.firstName = rstring(first)
e.lastName = rstring(last)
e.middleName = rstring(middle)
e.email = rstring(email)
e.institution = rstring(inst)
e.ldap = rbool(False)
# Fail-fast if no-password is passed and the server does not accept
# empty passwords
configService = c.getSession().getConfigService()
password_required = configService.getConfigValue(
"omero.security.password_required").lower()
if args.no_password and password_required != 'false':
self.ctx.die(
502, "Server does not allow user creation with empty"
" passwords")
# Check user existence
admin = c.getSession().getAdminService()
try:
usr = admin.lookupExperimenter(login)
if usr:
if args.ignore_existing:
self.ctx.out("User exists: %s (id=%s)" %
(login, usr.id.val))
return
else:
self.ctx.die(
3, "User exists: %s (id=%s)" % (login, usr.id.val))
except omero.ApiUsageException:
pass # Apparently no such user exists
[gid, groups] = self.list_groups(admin, args, use_context=False)
roles = admin.getSecurityRoles()
groups.append(Grp(roles.userGroupId, False))
if args.admin:
groups.append(Grp(roles.systemGroupId, False))
group = groups.pop(0)
try:
if args.no_password:
id = admin.createExperimenter(e, group, groups)
self.ctx.out("Added user %s (id=%s) without password" %
(login, id))
else:
if pasw is None:
pasw = self._ask_for_password(" for your new user (%s)" %
login,
strict=True)
id = admin.createExperimenterWithPassword(
e, rstring(pasw), group, groups)
self.ctx.out("Added user %s (id=%s) with password" %
(login, id))
except omero.ValidationException as ve:
# Possible, though unlikely after previous check
if self.exc.is_constraint_violation(ve):
self.ctx.die(66, "User already exists: %s" % login)
else:
self.ctx.die(67,
"Unknown ValidationException: %s" % ve.message)
except omero.SecurityViolation as se:
self.ctx.die(68, "Security violation: %s" % se.message)
def testFindAndCountAnnotationsForSharedData(self):
uuid = self.root.sf.getAdminService().getEventContext().sessionUuid
query = self.root.sf.getQueryService()
update = self.root.sf.getUpdateService()
admin = self.root.sf.getAdminService()
ipojo = self.root.sf.getContainerService()
### create new users
#group1
new_gr1 = ExperimenterGroupI()
new_gr1.name = rstring("group1_%s" % uuid)
gid = admin.createGroup(new_gr1)
#new user1
new_exp = ExperimenterI()
new_exp.omeName = rstring("user1_%s" % uuid)
new_exp.firstName = rstring("New")
new_exp.lastName = rstring("Test")
defaultGroup = admin.getGroup(gid)
listOfGroups = list()
listOfGroups.append(admin.lookupGroup("user"))
eid = admin.createExperimenterWithPassword(new_exp, rstring("ome"), defaultGroup, listOfGroups)
#new user2
new_exp2 = ExperimenterI()
new_exp2.omeName = rstring("user2_%s" % uuid)
new_exp2.firstName = rstring("New2")
new_exp2.lastName = rstring("Test2")
defaultGroup = admin.getGroup(gid)
listOfGroups = list()
listOfGroups.append(admin.lookupGroup("user"))
eid2 = admin.createExperimenterWithPassword(new_exp2, rstring("ome"), defaultGroup, listOfGroups)
## get users
user1 = admin.getExperimenter(eid)
user2 = admin.getExperimenter(eid2)
## login as user1
cl1 = self.new_client(user=user1, password="******")
update1 = cl1.sf.getUpdateService()
ipojo1 = cl1.sf.getContainerService()
# create image
img = ImageI()
img.setName(rstring('test1154-img-%s' % (uuid)))
img.setAcquisitionDate(rtime(0))
# default permission 'rw----':
img = update1.saveAndReturnObject(img)
img.unload()
ann1 = CommentAnnotationI()
ann1.textValue = rstring("user comment - %s" % uuid)
l_ann1 = ImageAnnotationLinkI()
l_ann1.setParent(img)
l_ann1.setChild(ann1)
update1.saveObject(l_ann1)
#user retrives the annotations for image
coll_count = ipojo1.getCollectionCount("Image", "ome.model.containers.Image_annotationLinks", [img.id.val], None)
self.assertEquals(1, coll_count.get(img.id.val, []))
#self.assertEquals(1, len(ipojo1.findAnnotations("Image", [img.id.val], None, None).get(img.id.val, [])))
## login as user2
cl2 = self.new_client(user=user2, password="******")
update2 = cl1.sf.getUpdateService()
ann = CommentAnnotationI()
ann.textValue = rstring("user2 comment - %s" % uuid)
l_ann = ImageAnnotationLinkI()
l_ann.setParent(img)
l_ann.setChild(ann)
update2.saveObject(l_ann)
#do they see the same vals?
#print ipojo1.getCollectionCount("Image", "ome.model.containers.Image_annotationLinks", [img.id.val], None)
#print ipojo.getCollectionCount("Image", "ome.model.containers.Image_annotationLinks", [img.id.val], None)
#print len(ipojo1.findAnnotations("Image", [img.id.val], None, None).get(img.id.val, []))
#print len(ipojo.findAnnotations("Image", [img.id.val], None, None).get(img.id.val, []))
coll_count = ipojo1.getCollectionCount("Image", "ome.model.containers.Image_annotationLinks", [img.id.val], None)
self.assertEquals(2, coll_count.get(img.id.val, []))
#anns = ipojo1.findAnnotations("Image", [img.id.val], None, None).get(img.id.val, [])
#self.assertEquals(2, len(anns))
#self.assert_(anns[0].details.permissions == 'rw----')
#self.assert_(anns[1].details.permissions == 'rw----')
cl1.sf.closeOnDestroy()
cl2.sf.closeOnDestroy()
def add(self, args):
email = args.email
login = args.username
first = args.firstname
middle = args.middlename
last = args.lastname
inst = args.institution
pasw = args.userpassword
import omero
from omero.rtypes import rstring
from omero_model_ExperimenterI import ExperimenterI as Exp
from omero_model_ExperimenterGroupI import ExperimenterGroupI as Grp
c = self.ctx.conn(args)
e = Exp()
e.omeName = rstring(login)
e.firstName = rstring(first)
e.lastName = rstring(last)
e.middleName = rstring(middle)
e.email = rstring(email)
e.institution = rstring(inst)
admin = c.getSession().getAdminService()
try:
usr = admin.lookupExperimenter(login)
if usr:
if args.ignore_existing:
self.ctx.out("User exists: %s (id=%s)"
% (login, usr.id.val))
return
else:
self.ctx.die(3, "User exists: %s (id=%s)"
% (login, usr.id.val))
except omero.ApiUsageException:
pass # Apparently no such user exists
groups = self.list_groups(admin, args)
roles = admin.getSecurityRoles()
groups.append(Grp(roles.userGroupId, False))
if args.admin:
groups.append(Grp(roles.systemGroupId, False))
group = groups.pop(0)
try:
if args.no_password:
id = admin.createExperimenter(e, group, groups)
self.ctx.out("Added user %s (id=%s) without password"
% (login, id))
else:
if pasw is None:
self._ask_for_password(" for your new user (%s)"
% login, strict=True)
id = admin.createExperimenterWithPassword(e, rstring(pasw),
group, groups)
self.ctx.out("Added user %s (id=%s) with password"
% (login, id))
except omero.ValidationException, ve:
# Possible, though unlikely after previous check
if self.exc.is_constraint_violation(ve):
self.ctx.die(66, "User already exists: %s" % login)
else:
self.ctx.die(67, "Unknown ValidationException: %s"
% ve.message)
def testFindAndCountAnnotationsForSharedData(self):
uuid = self.root.sf.getAdminService().getEventContext().sessionUuid
query = self.root.sf.getQueryService()
update = self.root.sf.getUpdateService()
admin = self.root.sf.getAdminService()
ipojo = self.root.sf.getContainerService()
### create new users
#group1
new_gr1 = ExperimenterGroupI()
new_gr1.name = rstring("group1_%s" % uuid)
gid = admin.createGroup(new_gr1)
#new user1
new_exp = ExperimenterI()
new_exp.omeName = rstring("user1_%s" % uuid)
new_exp.firstName = rstring("New")
new_exp.lastName = rstring("Test")
defaultGroup = admin.getGroup(gid)
listOfGroups = list()
listOfGroups.append(admin.lookupGroup("user"))
eid = admin.createExperimenterWithPassword(new_exp, rstring("ome"),
defaultGroup, listOfGroups)
#new user2
new_exp2 = ExperimenterI()
new_exp2.omeName = rstring("user2_%s" % uuid)
new_exp2.firstName = rstring("New2")
new_exp2.lastName = rstring("Test2")
defaultGroup = admin.getGroup(gid)
listOfGroups = list()
listOfGroups.append(admin.lookupGroup("user"))
eid2 = admin.createExperimenterWithPassword(new_exp2, rstring("ome"),
defaultGroup, listOfGroups)
## get users
user1 = admin.getExperimenter(eid)
user2 = admin.getExperimenter(eid2)
## login as user1
cl1 = self.new_client(user=user1, password="******")
update1 = cl1.sf.getUpdateService()
ipojo1 = cl1.sf.getContainerService()
# create image
img = ImageI()
img.setName(rstring('test1154-img-%s' % (uuid)))
img.setAcquisitionDate(rtime(0))
# default permission 'rw----':
img = update1.saveAndReturnObject(img)
img.unload()
ann1 = CommentAnnotationI()
ann1.textValue = rstring("user comment - %s" % uuid)
l_ann1 = ImageAnnotationLinkI()
l_ann1.setParent(img)
l_ann1.setChild(ann1)
update1.saveObject(l_ann1)
#user retrives the annotations for image
coll_count = ipojo1.getCollectionCount(
"Image", "ome.model.containers.Image_annotationLinks",
[img.id.val], None)
self.assertEquals(1, coll_count.get(img.id.val, []))
#self.assertEquals(1, len(ipojo1.findAnnotations("Image", [img.id.val], None, None).get(img.id.val, [])))
## login as user2
cl2 = self.new_client(user=user2, password="******")
update2 = cl1.sf.getUpdateService()
ann = CommentAnnotationI()
ann.textValue = rstring("user2 comment - %s" % uuid)
l_ann = ImageAnnotationLinkI()
l_ann.setParent(img)
l_ann.setChild(ann)
update2.saveObject(l_ann)
#do they see the same vals?
#print ipojo1.getCollectionCount("Image", "ome.model.containers.Image_annotationLinks", [img.id.val], None)
#print ipojo.getCollectionCount("Image", "ome.model.containers.Image_annotationLinks", [img.id.val], None)
#print len(ipojo1.findAnnotations("Image", [img.id.val], None, None).get(img.id.val, []))
#print len(ipojo.findAnnotations("Image", [img.id.val], None, None).get(img.id.val, []))
coll_count = ipojo1.getCollectionCount(
"Image", "ome.model.containers.Image_annotationLinks",
[img.id.val], None)
self.assertEquals(2, coll_count.get(img.id.val, []))
#anns = ipojo1.findAnnotations("Image", [img.id.val], None, None).get(img.id.val, [])
#self.assertEquals(2, len(anns))
#self.assert_(anns[0].details.permissions == 'rw----')
#self.assert_(anns[1].details.permissions == 'rw----')
cl1.sf.closeOnDestroy()
cl2.sf.closeOnDestroy()
def add(self, args):
email = args.email
login = args.username
first = args.firstname
middle = args.middlename
last = args.lastname
inst = args.institution
pasw = args.userpassword
import omero
from omero.rtypes import rstring
from omero_model_ExperimenterI import ExperimenterI as Exp
from omero_model_ExperimenterGroupI import ExperimenterGroupI as Grp
c = self.ctx.conn(args)
e = Exp()
e.omeName = rstring(login)
e.firstName = rstring(first)
e.lastName = rstring(last)
e.middleName = rstring(middle)
e.email = rstring(email)
e.institution = rstring(inst)
admin = c.getSession().getAdminService()
try:
usr = admin.lookupExperimenter(login)
if usr:
if args.ignore_existing:
self.ctx.out("User exists: %s (id=%s)"
% (login, usr.id.val))
return
else:
self.ctx.die(3, "User exists: %s (id=%s)"
% (login, usr.id.val))
except omero.ApiUsageException:
pass # Apparently no such user exists
groups = self.list_groups(admin, args)
roles = admin.getSecurityRoles()
groups.append(Grp(roles.userGroupId, False))
if args.admin:
groups.append(Grp(roles.systemGroupId, False))
group = groups.pop(0)
try:
if args.no_password:
id = admin.createExperimenter(e, group, groups)
self.ctx.out("Added user %s (id=%s) without password"
% (login, id))
else:
if pasw is None:
self._ask_for_password(" for your new user (%s)"
% login, strict=True)
id = admin.createExperimenterWithPassword(e, rstring(pasw),
group, groups)
self.ctx.out("Added user %s (id=%s) with password"
% (login, id))
except omero.ValidationException, ve:
# Possible, though unlikely after previous check
if self.exc.is_constraint_violation(ve):
self.ctx.die(66, "User already exists: %s" % login)
else:
self.ctx.die(67, "Unknown ValidationException: %s"
% ve.message)