def _convert_kg1_edge_to_swagger_edge(
self, neo4j_edge: Dict[str, any],
node_uuid_to_curie_dict: Dict[str, str]) -> Tuple[str, Edge]:
swagger_edge = Edge()
swagger_edge_key = f"KG1:{neo4j_edge.get('id')}"
swagger_edge.predicate = neo4j_edge.get("predicate")
swagger_edge.subject = node_uuid_to_curie_dict[neo4j_edge.get(
"source_node_uuid")]
swagger_edge.object = node_uuid_to_curie_dict[neo4j_edge.get(
"target_node_uuid")]
swagger_edge.relation = neo4j_edge.get("relation")
other_properties = ["provided_by", "probability"]
swagger_edge.attributes = self._create_swagger_attributes(
other_properties, neo4j_edge)
is_defined_by_attribute = Attribute(
name="is_defined_by",
value="ARAX/KG1",
type=eu.get_attribute_type("is_defined_by"))
swagger_edge.attributes.append(is_defined_by_attribute)
return swagger_edge_key, swagger_edge
def _convert_kg2_edge_to_swagger_edge(self, neo4j_edge: Dict[str,
any]) -> Edge:
swagger_edge = Edge()
swagger_edge_key = f"KG2:{neo4j_edge.get('id')}"
swagger_edge.predicate = neo4j_edge.get("simplified_edge_label")
swagger_edge.subject = neo4j_edge.get("subject")
swagger_edge.object = neo4j_edge.get("object")
swagger_edge.relation = neo4j_edge.get("relation")
# Add additional properties on KG2 edges as swagger Attribute objects
other_properties = [
"provided_by", "publications", "negated", "relation_curie",
"simplified_relation_curie", "simplified_relation", "edge_label"
]
swagger_edge.attributes = self._create_swagger_attributes(
other_properties, neo4j_edge)
is_defined_by_attribute = Attribute(
name="is_defined_by",
value="ARAX/KG2",
type=eu.get_attribute_type("is_defined_by"))
swagger_edge.attributes.append(is_defined_by_attribute)
return swagger_edge_key, swagger_edge
def _convert_to_swagger_edge(self, subject: str, object: str, name: str,
value: float) -> Tuple[str, Edge]:
swagger_edge = Edge()
swagger_edge.predicate = f"biolink:{name}"
swagger_edge.subject = subject
swagger_edge.object = object
swagger_edge_key = f"CHP:{subject}-{name}-{object}"
swagger_edge.relation = None
type = "EDAM:data_0951"
url = "https://github.com/di2ag/chp_client"
swagger_edge.attributes = [
Attribute(type=type, name=name, value=str(value), url=url),
Attribute(name="provided_by",
value=self.kp_name,
type=eu.get_attribute_type("provided_by")),
Attribute(name="is_defined_by",
value="ARAX",
type=eu.get_attribute_type("is_defined_by"))
]
return swagger_edge_key, swagger_edge
