def test_process_instructions(self):
protocol = self.get_protocol()
jpp = JSONProtocolProcessor(protocol)
jpp.process_deck()
jpp.process_head()
jpp.process_instructions()
api_calls = [
get_name_from_closure(cmd.do) for cmd in self.robot._commands
]
api_calls_expected = [
'pick_up_tip', 'aspirate', 'dispense', 'delay', 'aspirate',
'dispense', 'delay', 'drop_tip'
]
self.assertEqual(api_calls, api_calls_expected)
# self.robot.run()
instrument = self.robot._instruments["B"]
wells_referenced = [(i.get_parent().get_name(), i.get_name())
for i in instrument.placeables]
wells_referenced_expected = [
('p200-rack', 'A1'), # Location of first tip in tiprack
('.75 mL Tube Rack', 'A1'), # 1st transfer
('.75 mL Tube Rack', 'C1'), # 1st transfer
('.75 mL Tube Rack', 'A1'), # 2nd transfer
('.75 mL Tube Rack', 'C1'), # 2nd transfer
('trash', 'A1') # Location of tiprack in trash
]
self.assertEqual(wells_referenced, wells_referenced_expected)
def test_process_head(self):
protocol = self.get_protocol()
jpp = JSONProtocolProcessor(protocol)
jpp.process_deck()
jpp.process_head()
expected_settings = {
"tip-racks": [
self.robot._deck.containers()['p200-rack']
],
"trash-container": self.robot._deck.containers()['trash'],
"down-plunger-speed": 200,
"up-plunger-speed": 500,
"tip-plunge": 6,
"extra-pull-volume": 0,
"extra-pull-delay": 200,
"distribute-percentage": 0.1,
"points": [
{
"f1": 1,
"f2": 1
},
{
"f1": 5,
"f2": 5
},
{
"f1": 7,
"f2": 7
},
{
"f1": 10,
"f2": 10
}
]
}
instrument = self.robot._instruments["B"]
head_expected = {
'p200': {
'instance': instrument,
'settings': expected_settings
}
}
self.assertDictEqual(head_expected, jpp.head)
self.assertEqual(1, instrument.channels)
self.assertEqual(0, instrument.min_volume)
self.assertEqual(200, instrument.max_volume)
self.assertEqual('p200', instrument.name)
def test_process_head(self):
protocol = self.get_protocol()
jpp = JSONProtocolProcessor(protocol)
jpp.process_deck()
jpp.process_head()
expected_settings = {
"tip-racks": [self.robot._deck.containers()['p200-rack']],
"trash-container":
self.robot._deck.containers()['trash'],
"down-plunger-speed":
200,
"up-plunger-speed":
500,
"tip-plunge":
6,
"extra-pull-volume":
0,
"extra-pull-delay":
200,
"distribute-percentage":
0.1,
"points": [{
"f1": 1,
"f2": 1
}, {
"f1": 5,
"f2": 5
}, {
"f1": 7,
"f2": 7
}, {
"f1": 10,
"f2": 10
}]
}
instrument = self.robot._instruments["B"]
head_expected = {
'p200': {
'instance': instrument,
'settings': expected_settings
}
}
self.assertDictEqual(head_expected, jpp.head)
self.assertEqual(1, instrument.channels)
self.assertEqual(0, instrument.min_volume)
self.assertEqual(200, instrument.max_volume)
self.assertEqual('p200', instrument.name)
def test_process_instructions(self):
protocol = self.get_protocol()
jpp = JSONProtocolProcessor(protocol)
jpp.process_deck()
jpp.process_head()
jpp.process_instructions()
api_calls = [
get_name_from_closure(cmd.do)
for cmd in self.robot._commands
]
api_calls_expected = [
'pick_up_tip',
'aspirate',
'dispense',
'delay',
'aspirate',
'dispense',
'delay',
'drop_tip'
]
self.assertEqual(api_calls, api_calls_expected)
# self.robot.run()
instrument = self.robot._instruments["B"]
wells_referenced = [
(i.get_parent().get_name(), i.get_name())
for i in instrument.placeables
]
wells_referenced_expected = [
('p200-rack', 'A1'), # Location of first tip in tiprack
('.75 mL Tube Rack', 'A1'), # 1st transfer
('.75 mL Tube Rack', 'C1'), # 1st transfer
('.75 mL Tube Rack', 'A1'), # 2nd transfer
('.75 mL Tube Rack', 'C1'), # 2nd transfer
('B2', 'trash') # Location of tiprack in trash
]
self.assertEqual(wells_referenced, wells_referenced_expected)
