Python display_results Examples

Example #1

def action(args):

    controls, sample_groups = get_input(args.infile, split_description = args.split_desc)
    qadata = qa_from_csv(qafile)
    matrix = read_matrix(matrix_file)

    style = 'screen' if args.outfile == sys.stdout else 'file'
    outfile = get_outfile(args, label = 'results', ext = 'csv')
    
    if args.calculate_ion_ratios:
        qadata = add_ion_ratios(qadata, controls)

    samples = get_samples(controls, sample_groups, qadata, matrix)
    display_results(samples, outfile, style = style, grouped = args.grouped)

    if args.outfile is None:
        outfile.close()

Example #2

File: test_display.py Project: nhoffman/opiates

 def test03(self):
     display_results(self.samples, sys.stdout, grouped = False)

Example #3

File: test_display.py Project: nhoffman/opiates

 def test02(self):
     display_results(self.samples, sys.stdout, style = 'file')

Example #4

File: test_display.py Project: nhoffman/opiates

 def test01(self):
     display_results(self.samples, sys.stdout)

Example #5

 def test03(self):
     display_results(self.samples, sys.stdout, grouped=False)

Example #6

 def test02(self):
     display_results(self.samples, sys.stdout, style='file')

Example #7

 def test01(self):
     display_results(self.samples, sys.stdout)