Python smack Examples

Example #1

 def test_options(self):
     options = [
         ['-C'],
         ['-c'],
         ['-f'],
         ['-i', '1'],
         ['-r'],
         ['-s', 'check_spike'],
         ]
     for opt in options:
         smack(['config'] + opt)

Example #2

File: test_subcommands.py Project: nhoffman/opiates

 def test03(self):
     smack(["qa", "testfiles/oct24.json", "-o", "-", "--compound-id", "1", "--outcomes-only"])

Example #3

File: test_subcommands.py Project: nhoffman/opiates

 def test02(self):
     smack(["qa", "testfiles/oct24.json", "-o", "-", "--compound-id", "1"])

Example #4

File: test_subcommands.py Project: nhoffman/opiates

 def test01(self):
     smack(["qa", "testfiles/oct24.json", "-o", "-"])

Example #5

File: test_subcommands.py Project: nhoffman/opiates

 def test01(self):
     smack(["info", "testfiles/oct24.json"])

Example #6

 def test01(self):
     smack(['info', 'testfiles/oct24.json'])

Example #7

File: test_subcommands.py Project: nhoffman/opiates

 def test01(self):
     smack(["ion_ratios", "testfiles/oct24.json", "-o", "-"])

Example #8

File: test_subcommands.py Project: nhoffman/opiates

 def test02(self):
     outdir = self.mkoutdir()
     smack(["results", "testfiles/oct24.json", "--outdir", outdir])

Example #9

 def test01(self):
     outdir = self.mkoutdir()
     smack(['export', 'testfiles/opi_checkout.xml', '--outdir', outdir])

Example #10

 def test02(self):
     outdir = self.mkoutdir()
     smack(['results', 'testfiles/oct24.json', '--outdir', outdir])        

Example #11

 def test01(self):
     smack(['results', 'testfiles/oct24.json', '-o', '-'])

Example #12

 def test04(self):
     outdir = self.mkoutdir()
     smack(['qa', 'testfiles/oct24.json', '--outdir', outdir])        

Example #13

 def test03(self):
     smack(['qa', 'testfiles/oct24.json', '-o', '-', '--compound-id', '1', '--outcomes-only'])

Example #14

 def test02(self):
     smack(['qa', 'testfiles/oct24.json', '-o', '-', '--compound-id', '1'])

Example #15

 def test01(self):
     smack(['qa', 'testfiles/oct24.json', '-o', '-'])

Example #16

File: test_subcommands.py Project: nhoffman/opiates

 def test04(self):
     outdir = self.mkoutdir()
     smack(["qa", "testfiles/oct24.json", "--outdir", outdir])

Example #17

File: test_subcommands.py Project: nhoffman/opiates

 def test01(self):
     smack(["results", "testfiles/oct24.json", "-o", "-"])

Example #18

 def test01(self):
     smack(['ion_ratios', 'testfiles/oct24.json', '-o', '-'])

Example #19

File: test_subcommands.py Project: nhoffman/opiates

 def test01(self):
     outdir = self.mkoutdir()
     smack(["export", "testfiles/opi_checkout.xml", "--outdir", outdir])

Example #20

 def test02(self):
     outdir = self.mkoutdir()
     smack(['ion_ratios', 'testfiles/oct24.json', '--outdir', outdir])        

Example #21

File: test_subcommands.py Project: nhoffman/opiates

 def test02(self):
     outdir = self.mkoutdir()
     smack(["ion_ratios", "testfiles/oct24.json", "--outdir", outdir])

Example #22

File: test_subcommands.py Project: nhoffman/opiates

 def test_options(self):
     options = [["-C"], ["-c"], ["-f"], ["-i", "1"], ["-r"], ["-s", "check_spike"]]
     for opt in options:
         smack(["config"] + opt)