def __init__(self, parent):
QWidget.__init__(self)
OWComponent.__init__(self, parent)
SelectionGroupMixin.__init__(self)
ImageColorSettingMixin.__init__(self)
self.parent = parent
self.selection_type = SELECTMANY
self.saving_enabled = True
self.selection_enabled = True
self.viewtype = INDIVIDUAL # required bt InteractiveViewBox
self.highlighted = None
self.data_points = None
self.data_imagepixels = None
self.plotview = pg.PlotWidget(background="w", viewBox=InteractiveViewBox(self))
self.plot = self.plotview.getPlotItem()
self.plot.scene().installEventFilter(
HelpEventDelegate(self.help_event, self))
layout = QVBoxLayout()
self.setLayout(layout)
self.layout().setContentsMargins(0, 0, 0, 0)
self.layout().addWidget(self.plotview)
self.img = ImageItemNan()
self.img.setOpts(axisOrder='row-major')
self.plot.addItem(self.img)
self.plot.scene().sigMouseMoved.connect(self.plot.vb.mouseMovedEvent)
layout = QGridLayout()
self.plotview.setLayout(layout)
self.button = QPushButton("Menu", self.plotview)
self.button.setAutoDefault(False)
layout.setRowStretch(1, 1)
layout.setColumnStretch(1, 1)
layout.addWidget(self.button, 0, 0)
view_menu = MenuFocus(self)
self.button.setMenu(view_menu)
# prepare interface according to the new context
self.parent.contextAboutToBeOpened.connect(lambda x: self.init_interface_data(x[0]))
self.add_zoom_actions(view_menu)
common_options = dict(
labelWidth=50, orientation=Qt.Horizontal, sendSelectedValue=True,
valueType=str)
choose_xy = QWidgetAction(self)
box = gui.vBox(self)
box.setFocusPolicy(Qt.TabFocus)
self.xy_model = DomainModel(DomainModel.METAS | DomainModel.CLASSES,
valid_types=DomainModel.PRIMITIVE,
placeholder="Position (index)")
self.cb_attr_x = gui.comboBox(
box, self, "attr_x", label="Axis x:", callback=self.update_attr,
model=self.xy_model, **common_options)
box.setFocusProxy(self.cb_attr_x)
box.layout().addWidget(self.color_settings_box())
choose_xy.setDefaultWidget(box)
view_menu.addAction(choose_xy)
self.lsx = None # info about the X axis
self.lsy = None # info about the Y axis
self.data = None
self.data_ids = {}
def __init__(self, parent):
QWidget.__init__(self)
OWComponent.__init__(self, parent)
SelectionGroupMixin.__init__(self)
ImageColorSettingMixin.__init__(self)
self.parent = parent
self.selection_type = SELECTMANY
self.saving_enabled = True
self.selection_enabled = True
self.viewtype = INDIVIDUAL # required bt InteractiveViewBox
self.highlighted = None
self.data_points = None
self.data_imagepixels = None
self.plotview = pg.GraphicsLayoutWidget()
self.plot = pg.PlotItem(background="w",
viewBox=InteractiveViewBox(self))
self.plotview.addItem(self.plot)
self.legend = ImageColorLegend()
self.plotview.addItem(self.legend)
self.plot.scene().installEventFilter(
HelpEventDelegate(self.help_event, self))
layout = QVBoxLayout()
self.setLayout(layout)
self.layout().setContentsMargins(0, 0, 0, 0)
self.layout().addWidget(self.plotview)
self.img = ImageItemNan()
self.img.setOpts(axisOrder='row-major')
self.plot.addItem(self.img)
self.plot.scene().sigMouseMoved.connect(self.plot.vb.mouseMovedEvent)
layout = QGridLayout()
self.plotview.setLayout(layout)
self.button = QPushButton("Menu", self.plotview)
self.button.setAutoDefault(False)
layout.setRowStretch(1, 1)
layout.setColumnStretch(1, 1)
layout.addWidget(self.button, 0, 0)
view_menu = MenuFocus(self)
self.button.setMenu(view_menu)
# prepare interface according to the new context
self.parent.contextAboutToBeOpened.connect(
lambda x: self.init_interface_data(x[0]))
self.add_zoom_actions(view_menu)
common_options = dict(labelWidth=50,
orientation=Qt.Horizontal,
sendSelectedValue=True,
valueType=str)
choose_xy = QWidgetAction(self)
box = gui.vBox(self)
box.setFocusPolicy(Qt.TabFocus)
self.xy_model = DomainModel(DomainModel.METAS | DomainModel.CLASSES,
valid_types=DomainModel.PRIMITIVE,
placeholder="Position (index)")
self.cb_attr_x = gui.comboBox(box,
self,
"attr_x",
label="Axis x:",
callback=self.update_attr,
model=self.xy_model,
**common_options)
box.setFocusProxy(self.cb_attr_x)
box.layout().addWidget(self.setup_color_settings_box())
choose_xy.setDefaultWidget(box)
view_menu.addAction(choose_xy)
self.lsx = None # info about the X axis
self.lsy = None # info about the Y axis
self.data = None
self.data_ids = {}
class LineScanPlot(QWidget, OWComponent, SelectionGroupMixin,
ImageColorSettingMixin, ImageZoomMixin):
attr_x = ContextSetting(None)
gamma = Setting(0)
selection_changed = Signal()
def __init__(self, parent):
QWidget.__init__(self)
OWComponent.__init__(self, parent)
SelectionGroupMixin.__init__(self)
ImageColorSettingMixin.__init__(self)
self.parent = parent
self.selection_type = SELECTMANY
self.saving_enabled = True
self.selection_enabled = True
self.viewtype = INDIVIDUAL # required bt InteractiveViewBox
self.highlighted = None
self.data_points = None
self.data_imagepixels = None
self.plotview = pg.PlotWidget(background="w", viewBox=InteractiveViewBox(self))
self.plot = self.plotview.getPlotItem()
self.plot.scene().installEventFilter(
HelpEventDelegate(self.help_event, self))
layout = QVBoxLayout()
self.setLayout(layout)
self.layout().setContentsMargins(0, 0, 0, 0)
self.layout().addWidget(self.plotview)
self.img = ImageItemNan()
self.img.setOpts(axisOrder='row-major')
self.plot.addItem(self.img)
self.plot.scene().sigMouseMoved.connect(self.plot.vb.mouseMovedEvent)
layout = QGridLayout()
self.plotview.setLayout(layout)
self.button = QPushButton("Menu", self.plotview)
self.button.setAutoDefault(False)
layout.setRowStretch(1, 1)
layout.setColumnStretch(1, 1)
layout.addWidget(self.button, 0, 0)
view_menu = MenuFocus(self)
self.button.setMenu(view_menu)
# prepare interface according to the new context
self.parent.contextAboutToBeOpened.connect(lambda x: self.init_interface_data(x[0]))
self.add_zoom_actions(view_menu)
common_options = dict(
labelWidth=50, orientation=Qt.Horizontal, sendSelectedValue=True,
valueType=str)
choose_xy = QWidgetAction(self)
box = gui.vBox(self)
box.setFocusPolicy(Qt.TabFocus)
self.xy_model = DomainModel(DomainModel.METAS | DomainModel.CLASSES,
valid_types=DomainModel.PRIMITIVE,
placeholder="Position (index)")
self.cb_attr_x = gui.comboBox(
box, self, "attr_x", label="Axis x:", callback=self.update_attr,
model=self.xy_model, **common_options)
box.setFocusProxy(self.cb_attr_x)
box.layout().addWidget(self.color_settings_box())
choose_xy.setDefaultWidget(box)
view_menu.addAction(choose_xy)
self.lsx = None # info about the X axis
self.lsy = None # info about the Y axis
self.data = None
self.data_ids = {}
def init_interface_data(self, data):
same_domain = (self.data and data and
data.domain == self.data.domain)
if not same_domain:
self.init_attr_values(data)
def help_event(self, ev):
pos = self.plot.vb.mapSceneToView(ev.scenePos())
sel, wavenumber_ind = self._points_at_pos(pos)
prepared = []
if sel is not None:
prepared.append(str(self.wavenumbers[wavenumber_ind]))
for d in self.data[sel]:
variables = [v for v in self.data.domain.metas + self.data.domain.class_vars
if v not in [self.attr_x]]
features = ['{} = {}'.format(attr.name, d[attr]) for attr in variables]
features.append('value = {}'.format(d[wavenumber_ind]))
prepared.append("\n".join(features))
text = "\n\n".join(prepared)
if text:
text = ('<span style="white-space:pre">{}</span>'
.format(escape(text)))
QToolTip.showText(ev.screenPos(), text, widget=self.plotview)
return True
else:
return False
def update_attr(self):
self.update_view()
def init_attr_values(self, data):
domain = data.domain if data is not None else None
self.xy_model.set_domain(domain)
self.attr_x = self.xy_model[0] if self.xy_model else None
def set_data(self, data):
if data:
self.data = data
self.data_ids = {e: i for i, e in enumerate(data.ids)}
self.restore_selection_settings()
else:
self.data = None
self.data_ids = {}
def update_view(self):
self.img.clear()
self.img.setSelection(None)
self.lsx = None
self.lsy = None
self.wavenumbers = None
self.data_xs = None
self.data_imagepixels = None
if self.data and len(self.data.domain.attributes):
if self.attr_x is not None:
xat = self.data.domain[self.attr_x]
ndom = Domain([xat])
datam = Table(ndom, self.data)
coorx = datam.X[:, 0]
else:
coorx = np.arange(len(self.data))
self.lsx = lsx = values_to_linspace(coorx)
self.data_xs = coorx
self.wavenumbers = wavenumbers = getx(self.data)
self.lsy = lsy = values_to_linspace(wavenumbers)
# set data
imdata = np.ones((lsy[2], lsx[2])) * float("nan")
xindex = index_values(coorx, lsx)
yindex = index_values(wavenumbers, lsy)
for xind, d in zip(xindex, self.data.X):
imdata[yindex, xind] = d
self.data_imagepixels = xindex
self.img.setImage(imdata, autoLevels=False)
self.img.setLevels([0, 1])
self.update_levels()
self.update_color_schema()
# shift centres of the pixels so that the axes are useful
shiftx = _shift(lsx)
shifty = _shift(lsy)
left = lsx[0] - shiftx
bottom = lsy[0] - shifty
width = (lsx[1]-lsx[0]) + 2*shiftx
height = (lsy[1]-lsy[0]) + 2*shifty
self.img.setRect(QRectF(left, bottom, width, height))
self.refresh_img_selection()
def refresh_img_selection(self):
selected_px = np.zeros((self.lsy[2], self.lsx[2]), dtype=np.uint8)
selected_px[:, self.data_imagepixels] = self.selection_group
self.img.setSelection(selected_px)
def make_selection(self, selected, add):
"""Add selected indices to the selection."""
add_to_group, add_group, remove = selection_modifiers()
if self.data and self.lsx and self.lsy:
if add_to_group: # both keys - need to test it before add_group
selnum = np.max(self.selection_group)
elif add_group:
selnum = np.max(self.selection_group) + 1
elif remove:
selnum = 0
else:
self.selection_group *= 0
selnum = 1
if selected is not None:
self.selection_group[selected] = selnum
self.refresh_img_selection()
self.prepare_settings_for_saving()
self.selection_changed.emit()
def _points_at_pos(self, pos):
if self.data and self.lsx and self.lsy:
x, y = pos.x(), pos.y()
x_distance = np.abs(self.data_xs - x)
sel = (x_distance < _shift(self.lsx))
wavenumber_distance = np.abs(self.wavenumbers - y)
wavenumber_ind = np.argmin(wavenumber_distance)
return sel, wavenumber_ind
return None, None
def select_by_click(self, pos, add):
sel, _ = self._points_at_pos(pos)
self.make_selection(sel, add)
class LineScanPlot(QWidget, OWComponent, SelectionGroupMixin,
ImageColorSettingMixin, ImageZoomMixin):
attr_x = ContextSetting(None)
gamma = Setting(0)
selection_changed = Signal()
def __init__(self, parent):
QWidget.__init__(self)
OWComponent.__init__(self, parent)
SelectionGroupMixin.__init__(self)
ImageColorSettingMixin.__init__(self)
self.parent = parent
self.selection_type = SELECTMANY
self.saving_enabled = True
self.selection_enabled = True
self.viewtype = INDIVIDUAL # required bt InteractiveViewBox
self.highlighted = None
self.data_points = None
self.data_imagepixels = None
self.plotview = pg.GraphicsLayoutWidget()
self.plot = pg.PlotItem(background="w",
viewBox=InteractiveViewBox(self))
self.plotview.addItem(self.plot)
self.legend = ImageColorLegend()
self.plotview.addItem(self.legend)
self.plot.scene().installEventFilter(
HelpEventDelegate(self.help_event, self))
layout = QVBoxLayout()
self.setLayout(layout)
self.layout().setContentsMargins(0, 0, 0, 0)
self.layout().addWidget(self.plotview)
self.img = ImageItemNan()
self.img.setOpts(axisOrder='row-major')
self.plot.addItem(self.img)
self.plot.scene().sigMouseMoved.connect(self.plot.vb.mouseMovedEvent)
layout = QGridLayout()
self.plotview.setLayout(layout)
self.button = QPushButton("Menu", self.plotview)
self.button.setAutoDefault(False)
layout.setRowStretch(1, 1)
layout.setColumnStretch(1, 1)
layout.addWidget(self.button, 0, 0)
view_menu = MenuFocus(self)
self.button.setMenu(view_menu)
# prepare interface according to the new context
self.parent.contextAboutToBeOpened.connect(
lambda x: self.init_interface_data(x[0]))
self.add_zoom_actions(view_menu)
common_options = dict(labelWidth=50,
orientation=Qt.Horizontal,
sendSelectedValue=True,
valueType=str)
choose_xy = QWidgetAction(self)
box = gui.vBox(self)
box.setFocusPolicy(Qt.TabFocus)
self.xy_model = DomainModel(DomainModel.METAS | DomainModel.CLASSES,
valid_types=DomainModel.PRIMITIVE,
placeholder="Position (index)")
self.cb_attr_x = gui.comboBox(box,
self,
"attr_x",
label="Axis x:",
callback=self.update_attr,
model=self.xy_model,
**common_options)
box.setFocusProxy(self.cb_attr_x)
box.layout().addWidget(self.setup_color_settings_box())
choose_xy.setDefaultWidget(box)
view_menu.addAction(choose_xy)
self.lsx = None # info about the X axis
self.lsy = None # info about the Y axis
self.data = None
self.data_ids = {}
def init_interface_data(self, data):
same_domain = (self.data and data and data.domain == self.data.domain)
if not same_domain:
self.init_attr_values(data)
def help_event(self, ev):
pos = self.plot.vb.mapSceneToView(ev.scenePos())
sel, wavenumber_ind = self._points_at_pos(pos)
prepared = []
if sel is not None:
prepared.append(str(self.wavenumbers[wavenumber_ind]))
for d in self.data[sel]:
variables = [
v for v in self.data.domain.metas +
self.data.domain.class_vars if v not in [self.attr_x]
]
features = [
'{} = {}'.format(attr.name, d[attr]) for attr in variables
]
features.append('value = {}'.format(d[wavenumber_ind]))
prepared.append("\n".join(features))
text = "\n\n".join(prepared)
if text:
text = ('<span style="white-space:pre">{}</span>'.format(
escape(text)))
QToolTip.showText(ev.screenPos(), text, widget=self.plotview)
return True
else:
return False
def update_attr(self):
self.update_view()
def init_attr_values(self, data):
domain = data.domain if data is not None else None
self.xy_model.set_domain(domain)
self.attr_x = self.xy_model[0] if self.xy_model else None
def set_data(self, data):
if data:
self.data = data
self.data_ids = {e: i for i, e in enumerate(data.ids)}
self.restore_selection_settings()
else:
self.data = None
self.data_ids = {}
def update_view(self):
self.img.clear()
self.img.setSelection(None)
self.legend.set_colors(None)
self.lsx = None
self.lsy = None
self.wavenumbers = None
self.data_xs = None
self.data_imagepixels = None
if self.data and len(self.data.domain.attributes):
if self.attr_x is not None:
xat = self.data.domain[self.attr_x]
ndom = Domain([xat])
datam = self.data.transform(ndom)
coorx = datam.X[:, 0]
else:
coorx = np.arange(len(self.data))
self.lsx = lsx = values_to_linspace(coorx)
self.data_xs = coorx
self.wavenumbers = wavenumbers = getx(self.data)
self.lsy = lsy = values_to_linspace(wavenumbers)
# set data
imdata = np.ones((lsy[2], lsx[2])) * float("nan")
xindex = index_values(coorx, lsx)
yindex = index_values(wavenumbers, lsy)
for xind, d in zip(xindex, self.data.X):
imdata[yindex, xind] = d
self.data_imagepixels = xindex
self.img.setImage(imdata, autoLevels=False)
self.update_levels()
self.update_color_schema()
# shift centres of the pixels so that the axes are useful
shiftx = _shift(lsx)
shifty = _shift(lsy)
left = lsx[0] - shiftx
bottom = lsy[0] - shifty
width = (lsx[1] - lsx[0]) + 2 * shiftx
height = (lsy[1] - lsy[0]) + 2 * shifty
self.img.setRect(QRectF(left, bottom, width, height))
self.refresh_img_selection()
def refresh_img_selection(self):
selected_px = np.zeros((self.lsy[2], self.lsx[2]), dtype=np.uint8)
selected_px[:, self.data_imagepixels] = self.selection_group
self.img.setSelection(selected_px)
def make_selection(self, selected):
"""Add selected indices to the selection."""
add_to_group, add_group, remove = selection_modifiers()
if self.data and self.lsx and self.lsy:
if add_to_group: # both keys - need to test it before add_group
selnum = np.max(self.selection_group)
elif add_group:
selnum = np.max(self.selection_group) + 1
elif remove:
selnum = 0
else:
self.selection_group *= 0
selnum = 1
if selected is not None:
self.selection_group[selected] = selnum
self.refresh_img_selection()
self.prepare_settings_for_saving()
self.selection_changed.emit()
def _points_at_pos(self, pos):
if self.data and self.lsx and self.lsy:
x, y = pos.x(), pos.y()
x_distance = np.abs(self.data_xs - x)
sel = (x_distance < _shift(self.lsx))
wavenumber_distance = np.abs(self.wavenumbers - y)
wavenumber_ind = np.argmin(wavenumber_distance)
return sel, wavenumber_ind
return None, None
def select_by_click(self, pos):
sel, _ = self._points_at_pos(pos)
self.make_selection(sel)