def project(x, y, fromproj=KnownCoordinateSystems.geographic.world.WGS1984, toproj=KnownCoordinateSystems.geographic.world.WGS1984): """ Project geographic coordinates from one projection to another. :param x: (*array_like*) X coordinate values for projection. :param y: (*array_like*) Y coordinate values for projection. :param fromproj: (*ProjectionInfo*) From projection. Default is longlat projection. :param toproj: (*ProjectionInfo*) To projection. Default is longlat projection. :returns: (*array_like*, *array_like*) Projected geographic coordinates. """ if isinstance(fromproj, str): fromproj = ProjectionInfo.factory(fromproj) if isinstance(toproj, str): toproj = ProjectionInfo.factory(toproj) if isinstance(x, (tuple, list)): x = np.array(x) if isinstance(y, (tuple, list)): y = np.array(y) if isinstance(x, NDArray): outxy = Reproject.reproject(x.asarray(), y.asarray(), fromproj, toproj) return NDArray(outxy[0]), NDArray(outxy[1]) else: inpt = PointD(x, y) outpt = Reproject.reprojectPoint(inpt, fromproj, toproj) return outpt.X, outpt.Y
def reproject(a, x=None, y=None, fromproj=None, xp=None, yp=None, toproj=None, method='bilinear'): """ Project array :param a: (*array_like*) Input array. :param x: (*array_like*) Input x coordinates. :param y: (*array_like*) Input y coordinates. :param fromproj: (*ProjectionInfo*) Input projection. :param xp: (*array_like*) Projected x coordinates. :param yp: (*array_like*) Projected y coordinates. :param toproj: (*ProjectionInfo*) Output projection. :param method: Interpolation method: ``bilinear`` or ``neareast`` . :returns: (*NDArray*) Projected array """ if x is None or y is None: if isinstance(a, DimArray): y = a.dimvalue(a.ndim - 2) x = a.dimvalue(a.ndim - 1) else: raise ValueError('Input x/y coordinates are None') if fromproj is None: if isinstance(a, DimArray): fromproj = a.proj else: fromproj = KnownCoordinateSystems.geographic.world.WGS1984 if toproj is None: toproj = KnownCoordinateSystems.geographic.world.WGS1984 if method == 'bilinear': method = ResampleMethods.Bilinear else: method = ResampleMethods.NearestNeighbor if xp is None or yp is None: pr = Reproject.reproject(a.asarray(), x.aslist(), y.aslist(), fromproj, toproj, method) return NDArray(pr[0]), NDArray(pr[1]), NDArray(pr[2]) if isinstance(xp, (list, tuple)): xp = NDArray(xp) if isinstance(yp, (list, tuple)): yp = NDArray(yp) xp, yp = ArrayUtil.meshgrid(xp.asarray(), yp.asarray()) r = Reproject.reproject(a.asarray(), x.aslist(), y.aslist(), xp, yp, fromproj, toproj, method) return NDArray(r)
def __getitem__(self, indices): if isinstance(indices, slice): k = indices if k.start is None and k.stop is None and k.step is None: r = self.dataset.dataset.read(self.name) return DimArray(r, self.dims, self.fill_value, self.proj) if isinstance(indices, tuple): allnone = True for k in indices: if isinstance(k, slice): if (not k.start is None) or (not k.stop is None) or (not k.step is None): allnone = False break else: allnone = False break if allnone: r = self.dataset.dataset.read(self.name) return DimArray(r, self.dims, self.fill_value, self.proj) if indices is None: inds = [] for i in range(self.ndim): inds.append(slice(None)) indices = tuple(inds) if isinstance(indices, str): #metadata rr = self.dataset.read(self.name) m = rr.findMember(indices) data = rr.getArray(0, m) return NDArray(data) if not isinstance(indices, tuple): inds = [] inds.append(indices) indices = inds if len(indices) != self.ndim: print 'indices must be ' + str(self.ndim) + ' dimensions!' return None if not self.proj is None and not self.proj.isLonLat(): xlim = None ylim = None xidx = -1 yidx = -1 for i in range(0, self.ndim): dim = self.dims[i] if dim.getDimType() == DimensionType.X: k = indices[i] if isinstance(k, basestring): xlims = k.split(':') if len(xlims) == 1: xlim = [float(xlims[0])] else: xlim = [float(xlims[0]), float(xlims[1])] xidx = i elif dim.getDimType() == DimensionType.Y: k = indices[i] if isinstance(k, basestring): ylims = k.split(':') if len(ylims) == 1: ylim = [float(ylims[0])] else: ylim = [float(ylims[0]), float(ylims[1])] yidx = i if not xlim is None and not ylim is None: fromproj=KnownCoordinateSystems.geographic.world.WGS1984 inpt = PointD(xlim[0], ylim[0]) outpt1 = Reproject.reprojectPoint(inpt, fromproj, self.proj) if len(xlim) == 1: xlim = [outpt1.X] ylim = [outpt1.Y] else: inpt = PointD(xlim[1], ylim[1]) outpt2 = Reproject.reprojectPoint(inpt, fromproj, self.proj) xlim = [outpt1.X, outpt2.X] ylim = [outpt1.Y, outpt2.Y] indices1 = [] for i in range(0, self.ndim): if i == xidx: if len(xlim) == 1: indices1.append(str(xlim[0])) else: indices1.append(str(xlim[0]) + ':' + str(xlim[1])) elif i == yidx: if len(ylim) == 1: indices1.append(str(ylim[0])) else: indices1.append(str(ylim[0]) + ':' + str(ylim[1])) else: indices1.append(indices[i]) indices = indices1 origin = [] size = [] stride = [] ranges = [] dims = [] flips = [] onlyrange = True for i in range(0, self.ndim): isrange = True dimlen = self.dimlen(i) k = indices[i] if isinstance(k, int): if k < 0: k = self.dims[i].getLength() + k sidx = k eidx = k step = 1 elif isinstance(k, slice): if isinstance(k.start, basestring): sv = float(k.start) sidx = self.dims[i].getValueIndex(sv) elif isinstance(k.start, datetime.datetime): sv = miutil.date2num(k.start) sidx = self.dims[i].getValueIndex(sv) else: sidx = 0 if k.start is None else k.start if sidx < 0: sidx = self.dimlen(i) + sidx if isinstance(k.stop, basestring): ev = float(k.stop) eidx = self.dims[i].getValueIndex(ev) elif isinstance(k.stop, datetime.datetime): ev = miutil.date2num(k.stop) eidx = self.dims[i].getValueIndex(ev) else: eidx = self.dimlen(i) if k.stop is None else k.stop if eidx < 0: eidx = self.dimlen(i) + eidx eidx -= 1 if isinstance(k.step, basestring): nv = float(k.step) + self.dims[i].getDimValue()[0] nidx = self.dims[i].getValueIndex(nv) step = nidx - sidx elif isinstance(k.step, datetime.timedelta): nv = miutil.date2num(k.start + k.step) nidx = self.dims[i].getValueIndex(nv) step = nidx - sidx else: step = 1 if k.step is None else k.step if sidx > eidx: iidx = eidx eidx = sidx sidx = iidx elif isinstance(k, list): onlyrange = False isrange = False if not isinstance(k[0], datetime.datetime): ranges.append(k) else: tlist = [] for tt in k: sv = miutil.date2num(tt) idx = self.dims[i].getValueIndex(sv) tlist.append(idx) ranges.append(tlist) k = tlist elif isinstance(k, basestring): dim = self.variable.getDimension(i) kvalues = k.split(':') sv = float(kvalues[0]) sidx = dim.getValueIndex(sv) if len(kvalues) == 1: eidx = sidx step = 1 else: ev = float(kvalues[1]) eidx = dim.getValueIndex(ev) if len(kvalues) == 2: step = 1 else: step = int(float(kvalues[2]) / dim.getDeltaValue()) if sidx > eidx: iidx = eidx eidx = sidx sidx = iidx else: print k return None if isrange: if eidx >= dimlen: print 'Index out of range!' return None origin.append(sidx) n = eidx - sidx + 1 size.append(n) if n > 1: dim = self.variable.getDimension(i) if dim.isReverse(): step = -step dim = dim.extract(sidx, eidx, step) dim.setReverse(False) dims.append(dim) stride.append(step) if step < 0: step = abs(step) flips.append(i) rr = Range(sidx, eidx, step) ranges.append(rr) else: if len(k) > 1: dim = self.variable.getDimension(i) dim = dim.extract(k) dim.setReverse(False) dims.append(dim) #rr = self.dataset.read(self.name, origin, size, stride).reduce() if onlyrange: rr = self.dataset.dataset.read(self.name, ranges) else: rr = self.dataset.dataset.take(self.name, ranges) if rr.getSize() == 1: return rr.getObject(0) else: for i in flips: rr = rr.flip(i) rr = rr.reduce() ArrayMath.missingToNaN(rr, self.fill_value) if len(flips) > 0: rrr = Array.factory(rr.getDataType(), rr.getShape()) MAMath.copy(rrr, rr) array = NDArray(rrr) else: array = NDArray(rr) data = DimArray(array, dims, self.fill_value, self.dataset.proj) return data
def __getitem__(self, indices): #print type(indices) if not isinstance(indices, tuple): inds = [] inds.append(indices) indices = inds allint = True aindex = self.array.getIndex() i = 0 for ii in indices: if isinstance(ii, int): if ii < 0: ii = self.shape[i] + ii aindex.setDim(i, ii) else: allint = False break; i += 1 if allint: return self.array.getObject(aindex) if len(indices) != self.ndim: print 'indices must be ' + str(self.ndim) + ' dimensions!' raise IndexError() if not self.proj is None and not self.proj.isLonLat(): xlim = None ylim = None xidx = -1 yidx = -1 for i in range(0, self.ndim): dim = self.dims[i] if dim.getDimType() == DimensionType.X: k = indices[i] #if isinstance(k, (tuple, list)): if isinstance(k, basestring): xlims = k.split(':') xlim = [float(xlims[0]), float(xlims[1])] xidx = i elif dim.getDimType() == DimensionType.Y: k = indices[i] #if isinstance(k, (tuple, list)): if isinstance(k, basestring): ylims = k.split(':') ylim = [float(ylims[0]), float(ylims[1])] yidx = i if not xlim is None and not ylim is None: fromproj=KnownCoordinateSystems.geographic.world.WGS1984 inpt = PointD(xlim[0], ylim[0]) outpt1 = Reproject.reprojectPoint(inpt, fromproj, self.proj) inpt = PointD(xlim[1], ylim[1]) outpt2 = Reproject.reprojectPoint(inpt, fromproj, self.proj) xlim = [outpt1.X, outpt2.X] ylim = [outpt1.Y, outpt2.Y] indices1 = [] for i in range(0, self.ndim): if i == xidx: #indices1.append(xlim indices1.append(str(xlim[0]) + ':' + str(xlim[1])) elif i == yidx: #indices1.append(ylim) indices1.append(str(ylim[0]) + ':' + str(ylim[1])) else: indices1.append(indices[i]) indices = indices1 ndims = [] ranges = [] flips = [] iszerodim = True onlyrange = True alllist = True isempty = False nshape = [] for i in range(0, self.ndim): isrange = True k = indices[i] if isinstance(k, int): if k < 0: k = self.dims[i].getLength() + k sidx = k eidx = k step = 1 alllist = False elif isinstance(k, slice): if isinstance(k.start, basestring): sv = float(k.start) sidx = self.dims[i].getValueIndex(sv) elif isinstance(k.start, datetime.datetime): sv = miutil.date2num(k.start) sidx = self.dims[i].getValueIndex(sv) else: sidx = 0 if k.start is None else k.start if sidx < 0: sidx = self.dims[i].getLength() + sidx if isinstance(k.stop, basestring): ev = float(k.stop) eidx = self.dims[i].getValueIndex(ev) elif isinstance(k.stop, datetime.datetime): ev = miutil.date2num(k.stop) eidx = self.dims[i].getValueIndex(ev) else: eidx = self.dims[i].getLength() if k.stop is None else k.stop if eidx < 0: eidx = self.dims[i].getLength() + eidx eidx -= 1 if isinstance(k.step, basestring): nv = float(k.step) + self.dims[i].getDimValue()[0] nidx = self.dims[i].getValueIndex(nv) step = nidx - sidx elif isinstance(k.step, datetime.timedelta): nv = miutil.date2num(k.start + k.step) nidx = self.dims[i].getValueIndex(nv) step = nidx - sidx else: step = 1 if k.step is None else k.step alllist = False elif isinstance(k, list): onlyrange = False isrange = False if not isinstance(k[0], datetime.datetime): ranges.append(k) else: tlist = [] for tt in k: sv = miutil.date2num(tt) idx = self.dims[i].getValueIndex(sv) tlist.append(idx) ranges.append(tlist) k = tlist elif isinstance(k, basestring): dim = self.dims[i] kvalues = k.split(':') sidx = dim.getValueIndex(float(kvalues[0])) if len(kvalues) == 1: eidx = sidx step = 1 else: eidx = dim.getValueIndex(float(kvalues[1])) if len(kvalues) == 2: step = 1 else: step = int(float(kvalues[2]) / dim.getDeltaValue()) if sidx > eidx: iidx = eidx eidx = sidx sidx = iidx alllist = False else: print k raise IndexError() if isrange: if sidx >= self.shape[i]: raise IndexError() if sidx != eidx: iszerodim = False if step < 0: step = abs(step) flips.append(i) if eidx < sidx: tempidx = sidx sidx = eidx + 2 eidx = tempidx if eidx < sidx: isempty = True else: rr = Range(sidx, eidx, step) ranges.append(rr) n = eidx - sidx + 1 if n > 1: dim = self.dims[i] ndims.append(dim.extract(sidx, eidx, step)) nshape.append(eidx - sidx + 1 if eidx - sidx >= 0 else 0) else: if len(k) > 1: dim = self.dims[i] ndims.append(dim.extract(k)) if isempty: r = ArrayUtil.zeros(nshape, 'int') return MIArray(r) if onlyrange: r = ArrayMath.section(self.array, ranges) else: if alllist: r = ArrayMath.takeValues(self.array, ranges) return MIArray(r) else: r = ArrayMath.take(self.array, ranges) if r.getSize() == 1: return r.getObject(0) else: for i in flips: r = r.flip(i) rr = Array.factory(r.getDataType(), r.getShape()); MAMath.copy(rr, r); array = MIArray(rr) data = DimArray(array, ndims, self.fill_value, self.proj) return data
def __getitem__(self, indices): if indices is None: inds = [] for i in range(self.ndim): inds.append(slice(None)) indices = tuple(inds) if isinstance(indices, str): #metadata rr = self.dataset.read(self.name) m = rr.findMember(indices) data = rr.getArray(0, m) return MIArray(data) if not isinstance(indices, tuple): inds = [] inds.append(indices) indices = inds if len(indices) != self.ndim: print 'indices must be ' + str(self.ndim) + ' dimensions!' return None if not self.proj is None and not self.proj.isLonLat(): xlim = None ylim = None xidx = -1 yidx = -1 for i in range(0, self.ndim): dim = self.dims[i] if dim.getDimType() == DimensionType.X: k = indices[i] if isinstance(k, basestring): xlims = k.split(':') if len(xlims) == 1: xlim = [float(xlims[0])] else: xlim = [float(xlims[0]), float(xlims[1])] xidx = i elif dim.getDimType() == DimensionType.Y: k = indices[i] if isinstance(k, basestring): ylims = k.split(':') if len(ylims) == 1: ylim = [float(ylims[0])] else: ylim = [float(ylims[0]), float(ylims[1])] yidx = i if not xlim is None and not ylim is None: fromproj=KnownCoordinateSystems.geographic.world.WGS1984 inpt = PointD(xlim[0], ylim[0]) outpt1 = Reproject.reprojectPoint(inpt, fromproj, self.proj) if len(xlim) == 1: xlim = [outpt1.X] ylim = [outpt1.Y] else: inpt = PointD(xlim[1], ylim[1]) outpt2 = Reproject.reprojectPoint(inpt, fromproj, self.proj) xlim = [outpt1.X, outpt2.X] ylim = [outpt1.Y, outpt2.Y] indices1 = [] for i in range(0, self.ndim): if i == xidx: if len(xlim) == 1: indices1.append(str(xlim[0])) else: indices1.append(str(xlim[0]) + ':' + str(xlim[1])) elif i == yidx: if len(ylim) == 1: indices1.append(str(ylim[0])) else: indices1.append(str(ylim[0]) + ':' + str(ylim[1])) else: indices1.append(indices[i]) indices = indices1 origin = [] size = [] stride = [] ranges = [] dims = [] flips = [] onlyrange = True for i in range(0, self.ndim): isrange = True dimlen = self.dimlen(i) k = indices[i] if isinstance(k, int): if k < 0: k = self.dims[i].getLength() + k sidx = k eidx = k step = 1 elif isinstance(k, slice): if isinstance(k.start, basestring): sv = float(k.start) sidx = self.dims[i].getValueIndex(sv) elif isinstance(k.start, datetime.datetime): sv = miutil.date2num(k.start) sidx = self.dims[i].getValueIndex(sv) else: sidx = 0 if k.start is None else k.start if sidx < 0: sidx = self.dimlen(i) + sidx if isinstance(k.stop, basestring): ev = float(k.stop) eidx = self.dims[i].getValueIndex(ev) elif isinstance(k.stop, datetime.datetime): ev = miutil.date2num(k.stop) eidx = self.dims[i].getValueIndex(ev) else: eidx = self.dimlen(i) if k.stop is None else k.stop if eidx < 0: eidx = self.dimlen(i) + eidx eidx -= 1 if isinstance(k.step, basestring): nv = float(k.step) + self.dims[i].getDimValue()[0] nidx = self.dims[i].getValueIndex(nv) step = nidx - sidx elif isinstance(k.step, datetime.timedelta): nv = miutil.date2num(k.start + k.step) nidx = self.dims[i].getValueIndex(nv) step = nidx - sidx else: step = 1 if k.step is None else k.step if sidx > eidx: iidx = eidx eidx = sidx sidx = iidx elif isinstance(k, list): onlyrange = False isrange = False if not isinstance(k[0], datetime.datetime): ranges.append(k) else: tlist = [] for tt in k: sv = miutil.date2num(tt) idx = self.dims[i].getValueIndex(sv) tlist.append(idx) ranges.append(tlist) k = tlist elif isinstance(k, basestring): dim = self.variable.getDimension(i) kvalues = k.split(':') sv = float(kvalues[0]) sidx = dim.getValueIndex(sv) if len(kvalues) == 1: eidx = sidx step = 1 else: ev = float(kvalues[1]) eidx = dim.getValueIndex(ev) if len(kvalues) == 2: step = 1 else: step = int(float(kvalues[2]) / dim.getDeltaValue()) if sidx > eidx: iidx = eidx eidx = sidx sidx = iidx else: print k return None if isrange: if eidx >= dimlen: print 'Index out of range!' return None origin.append(sidx) n = eidx - sidx + 1 size.append(n) if n > 1: dim = self.variable.getDimension(i) if dim.isReverse(): step = -step dim = dim.extract(sidx, eidx, step) dim.setReverse(False) dims.append(dim) stride.append(step) if step < 0: step = abs(step) flips.append(i) rr = Range(sidx, eidx, step) ranges.append(rr) else: if len(k) > 1: dim = self.variable.getDimension(i) dim = dim.extract(k) dim.setReverse(False) dims.append(dim) #rr = self.dataset.read(self.name, origin, size, stride).reduce() if onlyrange: rr = self.dataset.dataset.read(self.name, ranges) else: rr = self.dataset.dataset.take(self.name, ranges) if rr.getSize() == 1: return rr.getObject(0) else: for i in flips: rr = rr.flip(i) rr = rr.reduce() ArrayMath.missingToNaN(rr, self.fill_value) if len(flips) > 0: rrr = Array.factory(rr.getDataType(), rr.getShape()) MAMath.copy(rrr, rr) array = MIArray(rrr) else: array = MIArray(rr) data = DimArray(array, dims, self.fill_value, self.dataset.proj) return data
def __getitem__(self, indices): #print type(indices) if not isinstance(indices, tuple): inds = [] inds.append(indices) indices = inds if len(indices) != self.ndim: print 'indices must be ' + str(self.ndim) + ' dimensions!' raise IndexError() if not self.proj is None and not self.proj.isLonLat(): xlim = None ylim = None xidx = -1 yidx = -1 for i in range(0, self.ndim): dim = self.dims[i] if dim.getDimType() == DimensionType.X: k = indices[i] #if isinstance(k, (tuple, list)): if isinstance(k, basestring): xlims = k.split(':') xlim = [float(xlims[0]), float(xlims[1])] xidx = i elif dim.getDimType() == DimensionType.Y: k = indices[i] #if isinstance(k, (tuple, list)): if isinstance(k, basestring): ylims = k.split(':') ylim = [float(ylims[0]), float(ylims[1])] yidx = i if not xlim is None and not ylim is None: fromproj=KnownCoordinateSystems.geographic.world.WGS1984 inpt = PointD(xlim[0], ylim[0]) outpt1 = Reproject.reprojectPoint(inpt, fromproj, self.proj) inpt = PointD(xlim[1], ylim[1]) outpt2 = Reproject.reprojectPoint(inpt, fromproj, self.proj) xlim = [outpt1.X, outpt2.X] ylim = [outpt1.Y, outpt2.Y] indices1 = [] for i in range(0, self.ndim): if i == xidx: #indices1.append(xlim indices1.append(str(xlim[0]) + ':' + str(xlim[1])) elif i == yidx: #indices1.append(ylim) indices1.append(str(ylim[0]) + ':' + str(ylim[1])) else: indices1.append(indices[i]) indices = indices1 #origin = [] #size = [] #stride = [] dims = [] ranges = [] flips = [] iszerodim = True onlyrange = True for i in range(0, self.ndim): isrange = True k = indices[i] if isinstance(k, int): if k < 0: k = self.dims[i].getLength() + k sidx = k eidx = k step = 1 elif isinstance(k, slice): sidx = 0 if k.start is None else k.start if sidx < 0: sidx = self.dims[i].getLength() + sidx eidx = self.dims[i].getLength()-1 if k.stop is None else k.stop-1 if eidx < 0: eidx = self.dims[i].getLength() + eidx step = 1 if k.step is None else k.step elif isinstance(k, list): if not isinstance(k[0], datetime.datetime): onlyrange = False isrange = False ranges.append(k) else: sv = k[0] sv = miutil.date2num(sv) dim = self.dims[i] sidx = dim.getValueIndex(sv) if len(k) == 1: eidx = sidx step = 1 else: ev = k[1] ev = miutil.date2num(ev) eidx = dim.getValueIndex(ev) if len(k) == 2: step = 1 else: nv = k[2] nv = miutil.date2num(k[0] + k[2]) - sv step = int(nv / dim.getDeltaValue()) if sidx > eidx: iidx = eidx eidx = sidx sidx = iidx elif isinstance(k, basestring): dim = self.dims[i] kvalues = k.split(':') sidx = dim.getValueIndex(float(kvalues[0])) if len(kvalues) == 1: eidx = sidx step = 1 else: eidx = dim.getValueIndex(float(kvalues[1])) if len(kvalues) == 2: step = 1 else: step = int(float(kvalues[2]) / dim.getDeltaValue()) if sidx > eidx: iidx = eidx eidx = sidx sidx = iidx else: print k raise IndexError() if isrange: if sidx >= self.shape[i]: raise IndexError() if sidx != eidx: iszerodim = False if step < 0: step = abs(step) flips.append(i) rr = Range(sidx, eidx, step) ranges.append(rr) #origin.append(sidx) n = eidx - sidx + 1 #size.append(n) #stride.append(step) if n > 1: dim = self.dims[i] dims.append(dim.extract(sidx, eidx, step)) else: if len(k) > 1: dim = self.dims[i] dims.append(dim.extract(k)) #r = ArrayMath.section(self.array.array, origin, size, stride) if onlyrange: r = ArrayMath.section(self.array.array, ranges) else: r = ArrayMath.take(self.array.array, ranges) if r.getSize() == 1: return r.getObject(0) else: for i in flips: r = r.flip(i) rr = Array.factory(r.getDataType(), r.getShape()); MAMath.copy(rr, r); array = MIArray(rr) data = DimArray(array, dims, self.fill_value, self.proj) return data