def printUsage(self):
self.printAppName()
print output.green("\nUsage: ") + output.teal(sys.argv[0]) + " [" + output.white("args") + "]\n"
keys = self.args.keys()
keys.sort()
for i in keys:
print " " + output.white(i) + " "*(self.key_width-len(i)) + self.args[i]
sys.exit()
def logb(s):
m = "\n"
p(m)
m = " " + output.white("+")*77
p(m)
m = " " + 3*"+" + " " + output.green(s)
p(m)
m = " " + output.white("+")*77 + "\n"
p(m)
def printFlags(self):
print output.white("\nFlags set:")
keys = self.initflags.keys()
keys.sort()
for key in keys:
if self.initflags[key]:
print key + " "*(self.flag_width-len(str(key))) + output.green("On")
else:
print key + " "*(self.flag_width-len(str(key))) + output.red("Off")
def run(self):
self.printAppName()
print output.white("\nDatabases selected for install/update:")
for db in Config.update_dbs:
print output.green(" * ") + db
self.printFlags()
print output.green("\nI'm giving you " + str(self.wait_sec) + " seconds to change your mind..\n")
time.sleep(self.wait_sec)
for db in Config.update_dbs:
update_db = None
prot = False
if Config.databases[db].has_key("protein"):
prot = True
# database is fasta
if Config.databases[db].has_key("fasta"):
update_db = dbfasta.FastaDatabase(
db,
Config.databases[db]["segments"],
protein=prot,
url=Config.ncbi_fasta,
flags=self.initflags
)
# database is pre-formatted
else:
update_db = dbasn1.Asn1Database(
db,
Config.databases[db]["segments"],
protein=prot,
flags=self.initflags
)
update_db.startUpdate()
def printStatus(self, success):
if (success):
print " "*70 + output.white("[") + output.green("done") + output.white("]")
else:
print " "*70 + output.white("[") + output.red("failed") + output.white("]")
def printMessage(self, text):
print output.green(" * ") + output.white(text) + " .."
def printBanner(self, text):
linewidth = 76
print output.white("+"*linewidth)
print output.white("+++ ") + output.green(text)
print output.white("+"*linewidth)
def logt(s):
m = output.green(" +++++ ") + output.white(s)
m += output.green(" +++++ ") + "\n"
p(m)
def logmw(s):
m = output.yellow(" * ") + output.white(s)
p(m)
def logm(s):
m = output.green(" * ") + output.white(s)
p(m)
def printAppName(self): print output.white(self.appName + " " + self.appVersion)
