def test_read_structured_omf_file():
"""Takes a file as an input and returns the vecorfield of data it contains
"""
for i in range(len(filenames)):
file = filenames[i]
byte = bytes[i]
nodes = filenames_nodes[i]
data = filenames_data_types[i]
# actual result
act = omf.read_structured_omf_file(file)
# all files should be retuned as numpy arrays
assert type(act) == np.ndarray
assert len(act) == nodes[0] * nodes[1] * nodes[2]
assert [int(dim) for dim in act.shape] == [len(act), 3]
# check binary4, binary8 files return expected data values
if i < 6:
exp = omf.read_structured_binary_oommf_data(
file, byte, nodes, data)
# check ascii files return expected data values
else:
exp = omf.read_structured_ascii_oommf_data(file, byte, nodes)
assert exp.all() == act.all()
# test print statements show if debug
if sysvers == 2:
debug = [0, 1]
for db in debug:
result = StringIO()
sys.stdout = result
omf.read_structured_omf_file(file, db)
result_string = result.getvalue()
# binary4 & binary8 files
if debug == 1 and i < 6:
floatsizes = [4, 4, 8, 8, 4, 4]
floatsize = floatsizes[i]
assert result_string == """Number of cells \
(Nx={},Ny={},Nz={})
Expect floats of length {} bytes.
Expect to find data in file {} at position {}.
verification_tag is okay (=> reading byte order correctly)\n"""\
.format(nodes[0], nodes[1], nodes[2], floatsize, file, byte)
# ascii files
elif debug == 1 and i > 5:
assert result_string == """Number of cells \
(Nx={},Ny={},Nz={})\n""".format(nodes[0], nodes[1], nodes[2])
# debug = False
elif debug == 0:
assert result_string == ''
def test_read_structured_omf_file():
"""Takes a file as an input and returns the vecorfield of data it contains
"""
for i in range(len(filenames)):
file = filenames[i]
byte = bytes[i]
nodes = filenames_nodes[i]
data = filenames_data_types[i]
# actual result
act = omf.read_structured_omf_file(file)
# all files should be retuned as numpy arrays
assert type(act) == np.ndarray
assert len(act) == nodes[0] * nodes[1] * nodes[2]
assert [int(dim) for dim in act.shape] == [len(act), 3]
# check binary4, binary8 files return expected data values
if i < 6:
exp = omf.read_structured_binary_oommf_data(file, byte, nodes,
data)
# check ascii files return expected data values
else:
exp = omf.read_structured_ascii_oommf_data(file, byte, nodes)
assert exp.all() == act.all()
# test print statements show if debug
if sysvers == 2:
debug = [0, 1]
for db in debug:
result = StringIO()
sys.stdout = result
omf.read_structured_omf_file(file, db)
result_string = result.getvalue()
# binary4 & binary8 files
if debug == 1 and i < 6:
floatsizes = [4, 4, 8, 8, 4, 4]
floatsize = floatsizes[i]
assert result_string == """Number of cells \
(Nx={},Ny={},Nz={})
Expect floats of length {} bytes.
Expect to find data in file {} at position {}.
verification_tag is okay (=> reading byte order correctly)\n"""\
.format(nodes[0], nodes[1], nodes[2], floatsize, file, byte)
# ascii files
elif debug == 1 and i > 5:
assert result_string == """Number of cells \
(Nx={},Ny={},Nz={})\n""".format(nodes[0], nodes[1], nodes[2])
# debug = False
elif debug == 0:
assert result_string == ''
def test_read_structured_oommf_data():
""" function takes a file, the byte at which data starts, the nodes of the
data and the data type, returns a vectorfield."""
for i in range(len(filenames)):
file = filenames[i]
byte = bytes[i]
nodes = filenames_nodes[i]
data = filenames_data_types[i]
# actual result
act = omf.read_structured_oommf_data(file, byte, nodes, data)
# all files retuned as numpy arrays
assert type(act) == np.ndarray
assert len(act) == nodes[0] * nodes[1] * nodes[2]
assert [int(dim) for dim in act.shape] == [len(act), 3]
# check binary4, binary8 files return expected data values
if i < 6:
exp = omf.read_structured_binary_oommf_data(
file, byte, nodes, data)
# check ascii files return expected data values
else:
exp = omf.read_structured_ascii_oommf_data(file, byte, nodes)
assert exp.all() == act.all()
# test function detects unexpected datatype
if sysvers == 2:
data_unknown = data + 'unknown'
result = StringIO()
sys.stdout = result
try:
omf.read_structured_oommf_data(file, byte, nodes, data + 'unknown')
x = 0
except Exception:
x = 1
if sysvers == 2:
result_string = result.getvalue()
assert result_string == """expected ascii or binary4 or binary8 for\
datatype, but got {}\n""".format(data_unknown)
assert x == 1
def test_read_structured_oommf_data():
""" function takes a file, the byte at which data starts, the nodes of the
data and the data type, returns a vectorfield."""
for i in range(len(filenames)):
file = filenames[i]
byte = bytes[i]
nodes = filenames_nodes[i]
data = filenames_data_types[i]
# actual result
act = omf.read_structured_oommf_data(file, byte, nodes, data)
# all files retuned as numpy arrays
assert type(act) == np.ndarray
assert len(act) == nodes[0] * nodes[1] * nodes[2]
assert [int(dim) for dim in act.shape] == [len(act), 3]
# check binary4, binary8 files return expected data values
if i < 6:
exp = omf.read_structured_binary_oommf_data(file, byte, nodes,
data)
# check ascii files return expected data values
else:
exp = omf.read_structured_ascii_oommf_data(file, byte, nodes)
assert exp.all() == act.all()
# test function detects unexpected datatype
if sysvers == 2:
data_unknown = data+'unknown'
result = StringIO()
sys.stdout = result
try:
omf.read_structured_oommf_data(file, byte, nodes, data+'unknown')
x = 0
except Exception:
x = 1
if sysvers == 2:
result_string = result.getvalue()
assert result_string == """expected ascii or binary4 or binary8 for\
datatype, but got {}\n""".format(data_unknown)
assert x == 1
def test_read_structured_binary_oommf_data():
"""the actual function takes, as inputs, the filename; its byte at which
data begins; its nodes values in a tuple; and the datatype (binary4,
binary8 or ascii). Returns an array of the vectorfield.
Utilises 'read_verification_tag' function."""
# test if ascii file given, exception is raised and print statement sent
for i in range(len(ascii_files)):
if sysvers == 2:
result = StringIO()
sys.stdout = result
try:
omf.read_structured_binary_oommf_data(ascii_files[i],
ascii_bytes[i],
ascii_nodes[i], b'ascii')
x = 0
except NotImplementedError:
x = 1
if sysvers == 2:
result_string = result.getvalue()
assert result_string == "ascii -oommf data not supported \
here\n"
assert x == 1
# test that an unknown data type is detected.
for i in range(len(filenames)):
if sysvers == 2:
result = StringIO()
sys.stdout = result
try:
omf.read_structured_binary_oommf_data(
filenames[i], bytes[i], filenames_nodes[i],
filenames_data_types[i] + 'unknown')
x = 0
except Exception:
x = 1
if sysvers == 2:
result_string = result.getvalue()
assert result_string == "unknown datatype (expected 'binary4',\
'binary8' [or 'ascii'], but got {}"\
.format(filenames_data_types[i]+'unknown\n')
assert x == 1
# test that incorrect verification tag is detected for binary4 and...
# ...binary8 files. Uses edited versions of files from 'filenames'...
# ...which have tags 7.27159209092e+31 and 4.91466545592e+252...
# ...rather than 1234567.0 and 123456789012345.0 respectively.
b4_b8_files = [
os.path.join('..', 'Examples', 'cantedvortextest.omf'),
os.path.join('..', 'Examples', 'ellipsoidwraptest.omf'),
os.path.join('..', 'Examples', 'h2hleftedgetest.ohf'),
os.path.join('..', 'Examples', 'yoyoleftedgetest.ohf'),
os.path.join('..', 'Examples', 'stdprob3v-regtest.omf'),
os.path.join('..', 'Examples', 'stdprobatest.omf')
]
for i in range(len(b4_b8_files)):
if sysvers == 2:
result = StringIO()
sys.stdout = result
try:
omf.read_structured_binary_oommf_data(b4_b8_files[i], bytes[i],
filenames_nodes[i],
filenames_data_types[i])
x = 0
except AssertionError:
x = 1
if sysvers == 2:
result_string = result.getvalue()
# if binary4, tag = 7.27159209092e+31
if i < 2 or i > 3:
assert result_string == """The first item in a binary file is \
meant to be 1234567.0
but it is not. Instead, I read {}.
Cowardly stopping here.\n""".format(7.271592090916425e+31)
# if binary8, tag = 4.91466545592e+252
if 1 < i < 4:
assert result_string == """The first item in a binary file is \
meant to be 123456789012345.0
but it is not. Instead, I read {}.
Cowardly stopping here.\n""".format(4.91466545592e+252)
assert x == 1
# test function output is as expected.
# actual result
for i in range(6):
file = filenames[i]
byte = bytes[i]
nodes = filenames_nodes[i]
data = filenames_data_types[i]
act = omf.read_structured_binary_oommf_data(file, byte, nodes, data)
# check result is a numpy array of correct length and shape
assert type(act) == np.ndarray
assert len(act) == filenames_nodes[i][0] * filenames_nodes[i][1] *\
filenames_nodes[i][2]
assert [int(dim) for dim in act.shape] == [len(act), 3]
# check data matches that of of orginal function
exp = omfread_original.read_structured_binary_oommf_data(
file, byte, nodes, data)
assert act.all() == exp.all()
# test verbose effects
if sysvers == 2:
for verbose in verboses:
for i in range(6):
file = filenames[i]
byte = bytes[i]
nodes = filenames_nodes[i]
data = filenames_data_types[i]
# the floatsizes of the first six files in 'filenames'
floatsizes = [4, 4, 8, 8, 4, 4]
floatsize = floatsizes[i]
result = StringIO()
sys.stdout = result
omf.read_structured_binary_oommf_data(file, byte, nodes, data,
verbose)
result_string = result.getvalue()
if verbose == 0:
assert result_string == ''
else:
assert result_string == """Expect floats of length {} bytes.
Expect to find data in file {} at position {}.
verification_tag is okay (=> reading byte order correctly)\n"""\
.format(floatsize, file, byte)
def test_read_structured_binary_oommf_data():
"""the actual function takes, as inputs, the filename; its byte at which
data begins; its nodes values in a tuple; and the datatype (binary4,
binary8 or ascii). Returns an array of the vectorfield.
Utilises 'read_verification_tag' function."""
# test if ascii file given, exception is raised and print statement sent
for i in range(len(ascii_files)):
if sysvers == 2:
result = StringIO()
sys.stdout = result
try:
omf.read_structured_binary_oommf_data(ascii_files[i],
ascii_bytes[i],
ascii_nodes[i], b'ascii')
x = 0
except NotImplementedError:
x = 1
if sysvers == 2:
result_string = result.getvalue()
assert result_string == "ascii -oommf data not supported \
here\n"
assert x == 1
# test that an unknown data type is detected.
for i in range(len(filenames)):
if sysvers == 2:
result = StringIO()
sys.stdout = result
try:
omf.read_structured_binary_oommf_data(filenames[i], bytes[i],
filenames_nodes[i],
filenames_data_types[i] +
'unknown')
x = 0
except Exception:
x = 1
if sysvers == 2:
result_string = result.getvalue()
assert result_string == "unknown datatype (expected 'binary4',\
'binary8' [or 'ascii'], but got {}"\
.format(filenames_data_types[i]+'unknown\n')
assert x == 1
# test that incorrect verification tag is detected for binary4 and...
# ...binary8 files. Uses edited versions of files from 'filenames'...
# ...which have tags 7.27159209092e+31 and 4.91466545592e+252...
# ...rather than 1234567.0 and 123456789012345.0 respectively.
b4_b8_files = [os.path.join('..', 'Examples', 'cantedvortextest.omf'),
os.path.join('..', 'Examples', 'ellipsoidwraptest.omf'),
os.path.join('..', 'Examples', 'h2hleftedgetest.ohf'),
os.path.join('..', 'Examples', 'yoyoleftedgetest.ohf'),
os.path.join('..', 'Examples', 'stdprob3v-regtest.omf'),
os.path.join('..', 'Examples', 'stdprobatest.omf')]
for i in range(len(b4_b8_files)):
if sysvers == 2:
result = StringIO()
sys.stdout = result
try:
omf.read_structured_binary_oommf_data(b4_b8_files[i], bytes[i],
filenames_nodes[i],
filenames_data_types[i])
x = 0
except AssertionError:
x = 1
if sysvers == 2:
result_string = result.getvalue()
# if binary4, tag = 7.27159209092e+31
if i < 2 or i > 3:
assert result_string == """The first item in a binary file is \
meant to be 1234567.0
but it is not. Instead, I read {}.
Cowardly stopping here.\n""".format(7.271592090916425e+31)
# if binary8, tag = 4.91466545592e+252
if 1 < i < 4:
assert result_string == """The first item in a binary file is \
meant to be 123456789012345.0
but it is not. Instead, I read {}.
Cowardly stopping here.\n""".format(4.91466545592e+252)
assert x == 1
# test function output is as expected.
# actual result
for i in range(6):
file = filenames[i]
byte = bytes[i]
nodes = filenames_nodes[i]
data = filenames_data_types[i]
act = omf.read_structured_binary_oommf_data(file, byte, nodes, data)
# check result is a numpy array of correct length and shape
assert type(act) == np.ndarray
assert len(act) == filenames_nodes[i][0] * filenames_nodes[i][1] *\
filenames_nodes[i][2]
assert [int(dim) for dim in act.shape] == [len(act), 3]
# check data matches that of of orginal function
exp = omfread_original.read_structured_binary_oommf_data(file, byte,
nodes, data)
assert act.all() == exp.all()
# test verbose effects
if sysvers == 2:
for verbose in verboses:
for i in range(6):
file = filenames[i]
byte = bytes[i]
nodes = filenames_nodes[i]
data = filenames_data_types[i]
# the floatsizes of the first six files in 'filenames'
floatsizes = [4, 4, 8, 8, 4, 4]
floatsize = floatsizes[i]
result = StringIO()
sys.stdout = result
omf.read_structured_binary_oommf_data(file, byte, nodes, data,
verbose)
result_string = result.getvalue()
if verbose == 0:
assert result_string == ''
else:
assert result_string == """Expect floats of length {} bytes.
Expect to find data in file {} at position {}.
verification_tag is okay (=> reading byte order correctly)\n"""\
.format(floatsize, file, byte)