def get_parser():
"""
returns the parser object for the oxli subcommand handler
"""
parser = argparse.ArgumentParser(
description='Single entry point script for khmer',
formatter_class=argparse.ArgumentDefaultsHelpFormatter)
subparsers = parser.add_subparsers()
# build-graph (formerly load-graph.py) parsers here
parser_build_graph = \
subparsers.add_parser('build-graph',
help="Load sequences into the compressible graph"
"format plus optional tagset",
description="Load sequences into the "
"compressible graph format plus optional tagset")
khmer_args.build_nodegraph_args("Load sequences into the compressible"
"graph format plus optional tagset.",
None, parser=parser_build_graph)
build_graph.build_parser(parser_build_graph)
parser_build_graph.set_defaults(func=build_graph.main)
return parser
def get_parser():
parser = build_nodegraph_args(descr="Load sequences into the compressible "
"graph format plus optional tagset.",
citations=['graph', 'SeqAn'])
parser = build_graph.build_parser(parser)
return parser
def get_parser():
"""Return the parser object for the oxli subcommand handler."""
parser = argparse.ArgumentParser(
description='Single entry point script for khmer',
formatter_class=argparse.ArgumentDefaultsHelpFormatter)
subparsers = parser.add_subparsers()
# build-graph (formerly load-graph.py) parsers here
parser_build_graph = \
subparsers.add_parser(
name='build-graph',
help="Load sequences into the compressible graph format "
"plus optional tagset")
parser_build_graph = build_nodegraph_args(parser=parser_build_graph)
build_graph.build_parser(parser_build_graph)
parser_build_graph.set_defaults(func=build_graph.main)
return parser
def get_parser():
parser = build_hashbits_args(descr="Load sequences into the compressible "
"graph format plus optional tagset.")
parser = build_graph.build_parser(parser)
return parser
def get_parser():
parser = build_hashbits_args(descr="Load sequences into the compressible "
"graph format plus optional tagset.")
parser = build_graph.build_parser(parser)
return parser
