def deserialize(self, text_string):
# fill self with json dictionary
try:
self.__dict__ = deserialize(text_string)
except:
tolog(
' received exception while converting json string to ArgoJob: '
+ str(sys.exc_info()[1]))
raise
# convert unicode strings to strings
self.preprocess = convert_unicode_string(self.preprocess)
self.preprocess_args = convert_unicode_string(self.preprocess_args)
self.postprocess = convert_unicode_string(self.postprocess)
self.postprocess_args = convert_unicode_string(self.postprocess_args)
self.input_url = convert_unicode_string(self.input_url)
self.output_url = convert_unicode_string(self.output_url)
self.username = convert_unicode_string(self.username)
self.group_identifier = convert_unicode_string(self.group_identifier)
self.job_status_routing_key = convert_unicode_string(
self.job_status_routing_key)
# need to convert vector of json job strings to objects
tmp_jobs = []
for job_dictionary in self.jobs:
tmp_job = BalsamJob()
tmp_job.__dict__ = job_dictionary
tmp_jobs.append(tmp_job)
# now copy into job list
self.jobs = tmp_jobs
def deserialize(self, text_string):
# fill self with json dictionary
try:
self.__dict__ = deserialize(text_string)
except:
tolog(" received exception while converting json string to ArgoJob: " + str(sys.exc_info()[1]))
raise
# convert unicode strings to strings
self.preprocess = convert_unicode_string(self.preprocess)
self.preprocess_args = convert_unicode_string(self.preprocess_args)
self.postprocess = convert_unicode_string(self.postprocess)
self.postprocess_args = convert_unicode_string(self.postprocess_args)
self.input_url = convert_unicode_string(self.input_url)
self.output_url = convert_unicode_string(self.output_url)
self.username = convert_unicode_string(self.username)
self.group_identifier = convert_unicode_string(self.group_identifier)
self.job_status_routing_key = convert_unicode_string(self.job_status_routing_key)
# need to convert vector of json job strings to objects
tmp_jobs = []
for job_dictionary in self.jobs:
tmp_job = BalsamJob()
tmp_job.__dict__ = job_dictionary
tmp_jobs.append(tmp_job)
# now copy into job list
self.jobs = tmp_jobs
def deserialize(self, text_string):
tolog("Job received: %s", text_string)
try:
self.__dict__ = deserialize(text_string)
except:
tolog(
' received exception while converting json string to BalsamJob: '
+ str(sys.exc_info()[1]))
raise
self.executable = convert_unicode_string(self.executable)
self.executable_args = convert_unicode_string(self.executable_args)
self.input_url = convert_unicode_string(self.input_url)
tmp_input_files = []
for i_file in self.input_files:
tmp_input_files.append(convert_unicode_string(i_file))
self.input_files = tmp_input_files
self.output_url = convert_unicode_string(self.output_url)
tmp_output_files = []
for o_file in self.output_files:
tmp_output_files.append(convert_unicode_string(o_file))
self.output_files = tmp_output_files
self.preprocess = convert_unicode_string(self.preprocess)
self.preprocess_args = convert_unicode_string(self.preprocess_args)
self.postprocess = convert_unicode_string(self.postprocess)
self.postprocess_args = convert_unicode_string(self.postprocess_args)
self.scheduler_args = convert_unicode_string(self.scheduler_args)
self.condor_job_file = convert_unicode_string(self.condor_job_file)
self.condor_dagman_file = convert_unicode_string(
self.condor_dagman_file)
self.target_site = convert_unicode_string(self.target_site)
def deserialize(self, text_string):
tolog("Job received: %s", text_string)
try:
self.__dict__ = deserialize(text_string)
except:
tolog(" received exception while converting json string to BalsamJob: " + str(sys.exc_info()[1]))
raise
self.executable = convert_unicode_string(self.executable)
self.executable_args = convert_unicode_string(self.executable_args)
self.input_url = convert_unicode_string(self.input_url)
tmp_input_files = []
for i_file in self.input_files:
tmp_input_files.append(convert_unicode_string(i_file))
self.input_files = tmp_input_files
self.output_url = convert_unicode_string(self.output_url)
tmp_output_files = []
for o_file in self.output_files:
tmp_output_files.append(convert_unicode_string(o_file))
self.output_files = tmp_output_files
self.preprocess = convert_unicode_string(self.preprocess)
self.preprocess_args = convert_unicode_string(self.preprocess_args)
self.postprocess = convert_unicode_string(self.postprocess)
self.postprocess_args = convert_unicode_string(self.postprocess_args)
self.scheduler_args = convert_unicode_string(self.scheduler_args)
self.condor_job_file = convert_unicode_string(self.condor_job_file)
self.condor_dagman_file = convert_unicode_string(self.condor_dagman_file)
self.target_site = convert_unicode_string(self.target_site)
