import makeunitdb
from ocptype import ANNOTATION, UINT32
from params import Params
from ramon import H5AnnotationFile, setField, getField, queryField, makeAnno, createSpecificSynapse
from postmethods import putAnnotation, getAnnotation, getURL, postURL
import kvengine_to_test
import site_to_test
#from ocpgraph import genGraphRAMON
SITE_HOST = site_to_test.site
p = Params()
p.token = 'unittest'
p.resolution = 0
p.channels = ['ANNO1']
p.channel_type = ANNOTATION
p.datatype = UINT32
class Test_GraphGen:
def setup_class(self):
"""Create the unittest database"""
makeunitdb.createTestDB(p.token, channel_list=p.channels, public=True, readonly=0)
cutout1 = "0/2,5/1,3/0,2"
cutout2 = "0/1,3/4,6/2,5"
cutout3 = "0/4,6/2,5/5,7"
cutout4 = "0/6,8/5,9/2,4"
syn_segments1 = [[7, 3], ]
syn_segments2 = [[7, 4], ]
os.environ['DJANGO_SETTINGS_MODULE'] = 'OCP.settings'
from ocptype import IMAGE, UINT8
from params import Params
from jsonproj import createJson
from postmethods import getURL, postURL, postNPZ, getNPZ
import makeunitdb
import site_to_test
SITE_HOST = site_to_test.site
p = Params()
p.token = 'unittest'
p.resolution = 0
p.channels = ['CHAN1', 'CHAN2']
p.channel_type = IMAGE
p.datatype = UINT8
p.dataset = 'unittest_ds'
class Test_Project_Json():
def setup_class(self):
"""Setup Parameters"""
pass
def teardown_class(self):
"""Teardown Parameters"""
makeunitdb.deleteTestDB('unittest')
makeunitdb.deleteTestDB('unittest2')
def test_basic_json(self):
os.environ['DJANGO_SETTINGS_MODULE'] = 'OCP.settings'
from ocptype import IMAGE, UINT8
from params import Params
from jsonproj import createJson
from postmethods import getURL, postURL, postNPZ, getNPZ
import makeunitdb
import site_to_test
SITE_HOST = site_to_test.site
p = Params()
p.token = 'unittest'
p.resolution = 0
p.channels = ['CHAN1', 'CHAN2']
p.channel_type = IMAGE
p.datatype = UINT8
p.dataset = 'unittest_ds'
class Test_Project_Json():
def setup_class(self):
"""Setup Parameters"""
pass
def teardown_class(self):
"""Teardown Parameters"""
#makeunitdb.deleteTestDB('unittest')
#makeunitdb.deleteTestDB('unittest2')
# calling a different fucntion for project list as django1.9 introduced new weirdness
makeunitdb.deleteTestDBList(['unittest','unittest2'])
import blosc
import time
sys.path += [os.path.abspath('../django/')]
import OCP.settings
os.environ['DJANGO_SETTINGS_MODULE'] = 'ocpblaze.settings'
from ocplib import MortonXYZ
from params import Params
p = Params()
p.token = "blaze"
p.resolution = 0
p.channels = ['image']
p.window = [0,0]
p.channel_type = "image"
p.datatype = "uint32"
SIZE = 1024
ZSIZE = 16
def generateURL(zidx):
"""Run the Benchmark."""
i = zidx
[x,y,z] = MortonXYZ(i)
p.args = (x*SIZE, (x+1)*SIZE, y*SIZE, (y+1)*SIZE, z*ZSIZE, (z+1)*ZSIZE)
image_data = np.ones([1,ZSIZE,SIZE,SIZE], dtype=np.uint32) * random.randint(0,255)
return postBlosc(p, image_data)
def generateURL2(zidx):
[x,y,z] = MortonXYZ(zidx)
from params import Params
import kvengine_to_test
import site_to_test
import makeunitdb
SITE_HOST = site_to_test.site
# Test_Propagate
#
# 1 - test_update_propagate - Test the propagate service set values
p = Params()
p.token = 'unittest'
p.resolution = 0
p.channels = ['chan1']
p.channel_type = "image"
p.datatype = "uint8"
class Test_Image_Zslice_Propagate:
"""Test image propagation"""
def setup_class(self):
"""Create the unittest database"""
makeunitdb.createTestDB(p.token,
public=True,
channel_list=p.channels,
channel_type=p.channel_type,
channel_datatype=p.datatype,
ximagesize=1000,
yimagesize=1000,
zimagesize=10)
import numpy as np
import pytest
from contextlib import closing
import networkx as nx
import makeunitdb
from ndlib.ndtype import ANNOTATION, UINT32
from params import Params
from ramonmethods import H5AnnotationFile, setField, getField, queryField, makeAnno, createSpecificSynapse
from postmethods import putAnnotation, getAnnotation, getURL, postURL
from test_settings import *
p = Params()
p.token = 'unittest'
p.resolution = 0
p.channels = ['ANNO1']
p.channel_type = ANNOTATION
p.datatype = UINT32
@pytest.mark.skipif(True, reason='Test not necessary for dev mode')
class Test_GraphGen:
def setup_class(self):
"""Create the unittest database"""
makeunitdb.createTestDB(p.token,
channel_list=p.channels,
public=True,
readonly=0,
ximagesize=100,
yimagesize=100,
zimagesize=100)
# Test_Image_Post
# 1 - test_npz
# 2 - test_npz_incorrect_region
# 3 - test_npz_incorrect_datatype
# 4 - test_hdf5
# 5 - test_hdf5_incorrect_region
# 6 - test_hdf5_incorrect_datatype
# 7 - test_npz_incorrect_channel
# 8 - test_hdf5_incorrect_channel
p = Params()
p.token = 'unittest'
p.resolution = 0
p.channels = ['IMAGE1', 'IMAGE2']
p.window = [0, 500]
p.channel_type = TIMESERIES
p.datatype = UINT8
p.voxel = [4.0, 4.0, 3.0]
#p.args = (3000,3100,4000,4100,500,510)
class Test_Image_Slice:
def setup_class(self):
"""Setup class parameters"""
makeunitdb.createTestDB(p.token,
channel_list=p.channels,
channel_type=p.channel_type,
channel_datatype=p.datatype)
def teardown_class(self):
"""Cleanup class parameters"""
import makeunitdb
from ndlib.ndtype import *
from params import Params
from postmethods import *
from test_settings import *
# Test_Blosc
# 1 - test_get_blosc
# 2 - test_post_blosc
p = Params()
p.token = 'unittest'
p.resolution = 0
p.channels = ['IMAGE1', 'IMAGE2']
p.window = [0,500]
p.channel_type = TIMESERIES
p.datatype = UINT8
p.voxel = [4.0,4.0,3.0]
class Test_Blosc:
def setup_class(self):
makeunitdb.createTestDB(p.token, channel_list=p.channels, channel_type=p.channel_type, channel_datatype=p.datatype)
def teardown_class(self):
makeunitdb.deleteTestDB(p.token)
def test_get_blosc (self):
"""Test the xy slice cutout"""
