Example #1
0
def test2(t = None):
    """Test str()"""
    modifier = 1

    t,t2 = (t, translateTree(t)) if t else createTrees()
    s = str(t2)
    if s[-1] != ';':
        modifier = 0.95
        s += ';'

    t3 = parseNewick_sol.parseNewick(s)
    return modifier*float(sameTrees(t,t3))
def checkStr(s):
    try:
        T1 = parseNewick_sol.parseNewick(s)
        T2 = parseNewick.parseNewick(s)

        S = compareTree(T1, T2)
        if 0 in S:
            return 0

        score = 1
        if 1 in S:
            score -= 0.15
        if 2 in S:
            score -= 0.1
        if 3 in S:
            score -= 0.25
        if 4 in S:
            score -= 0.25
        return score
    except Exception as e:
        return 0
def checkStr(s):
    try:
        T1 = parseNewick_sol.parseNewick(s)
        T2 = parseNewick.parseNewick(s)

        S = compareTree(T1,T2)
        if 0 in S:
            return 0

        score = 1
        if 1 in S:
            score -= 0.15
        if 2 in S:
            score -= 0.1
        if 3 in S:
            score -= 0.25
        if 4 in S:
            score -= 0.25
        return score
    except Exception as e:
        return 0