def __init__(self, dictionary_name):
"""
>>> bag_of_words.dictionary #doctest: +ELLIPSIS
{..., 'herbicid': 2724, 'silica': 1072, 'phosphat': 1499}
"""
self.dictionary = self._load_dictionary(dictionary_name)
self.wordcount = WordCount()
def __init__(self, dictionary_name):
"""
>>> bag_of_words.dictionary #doctest: +ELLIPSIS
{..., 'herbicid': 2724, 'silica': 1072, 'phosphat': 1499}
"""
self.dictionary = self._load_dictionary(dictionary_name)
self.wordcount = WordCount()
class DictionaryMaker:
"""
>>> dictionary_maker = DictionaryMaker() #doctest: +ELLIPSIS
[...
"""
def __init__(self):
self.wordcount = WordCount()
self.wordcount_dictionary = {}
@log_timer
def parse(self, directory, max_parsed_patents):
n = 0
for fn in os.listdir(directory):
self.logger.info(directory + os.sep + fn)
patent_list = cPickle.load(open(directory + os.sep + fn, "rb"))
for patent in patent_list:
self.wordcount.parse_text(patent.abstract,
self.wordcount_dictionary)
self.wordcount.parse_text(patent.description,
self.wordcount_dictionary)
self.wordcount.parse_text(patent.claims,
self.wordcount_dictionary)
self.wordcount.parse_text(patent.title,
self.wordcount_dictionary)
n += 1
if n > max_parsed_patents:
break
self.logger.info("Parsed: " + str(n) + " patents")
@log_timer
def dump(self, dictionary_name, dict_max_size):
sorted_wordcount = sorted(self.wordcount_dictionary.items(),
key=operator.itemgetter(1),
reverse=True)[:dict_max_size]
with open(dictionary_name, 'w') as f:
keys = [item[0] for item in sorted_wordcount]
f.write('\n'.join(keys))
class BagOfWords():
def __init__(self, dictionary_name):
"""
>>> bag_of_words.dictionary #doctest: +ELLIPSIS
{..., 'herbicid': 2724, 'silica': 1072, 'phosphat': 1499}
"""
self.dictionary = self._load_dictionary(dictionary_name)
self.wordcount = WordCount()
@log_timer
def parse_all(self, patents_directory, destination_directory,
package_size):
patents_list = []
package_index = 1
Supervisor._create_directory_if_not_exists(destination_directory)
for filename in os.listdir(patents_directory):
patent_filename = patents_directory + os.sep + filename
self.logger.info("Opening file with serialized patents: " +
patent_filename)
patents_list += self.parse_one_file(patent_filename)
if len(patents_list) > package_size:
serialized_patent_filename = destination_directory + os.sep + "ml-patents_" + str(
package_index)
self._serialize_patent_list(serialized_patent_filename,
patents_list[:package_size])
package_index += 1
patents_list = patents_list[package_size:]
serialized_patent_filename = destination_directory + os.sep + "ml-patents_" + str(
package_index)
self._serialize_patent_list(serialized_patent_filename,
patents_list[:package_size])
@log_timer
def parse_one_file(self, filename):
"""
>>> serialized_patents = resource_filename("patent_parsing_tools.bow.tests", "xml_tuple_short")
>>> bag_of_words.parse_one_file(serialized_patents) #doctest: +ELLIPSIS
[('08923091', [['G', '01', 'V', '1', '36'], ['G', '01', 'S', '7', '28'], ['G', '01', 'S', '7', '292']], {'invent': 7, ...})]
"""
parsed_patent_list = []
with open(filename, 'rb') as f:
patent_list = self._load_patent_list(f)
for patent in patent_list:
parsed_patent_list.append(self._parse_patent(patent))
return parsed_patent_list
def _parse_patent(self, patent):
"""
>>> patent = Patent()
>>> patent.title = "ala ma kota"
>>> patent.abstract = "ala ma kota"
>>> patent.description = "a1a ma kota"
>>> patent.claims = "kot ma alę"
>>> patent.documentID = "asdf1"
>>> patent.classification = [['G', '01', 'V', '1', '36']]
>>> bag_of_words._parse_patent(patent)
('asdf1', [['G', '01', 'V', '1', '36']], {'ma': 4, 'al': 1, 'ala': 2, 'a1a': 1, 'kot': 1, 'kota': 3})
"""
dictionary = self.wordcount.parse_text(patent.title)
dictionary = self.wordcount.parse_text(patent.abstract, dictionary)
dictionary = self.wordcount.parse_text(patent.description, dictionary)
dictionary = self.wordcount.parse_text(patent.claims, dictionary)
patent.classification
return patent.documentID, patent.classification, dictionary
def _serialize_patent_list(self, serialized_patent_filename, patent_list):
"""
>>> patent_list = [('asdf1', [['G', '01', 'V', '1', '36']], {'ma': 4, 'al': 1, 'ala': 2, 'a1a': 1, 'kot': 1, 'kota': 3})]
>>> bag_of_words._serialize_patent_list("./final_serialized_patent", patent_list)
>>> with open("./final_serialized_patent", 'r') as fin:
... print fin.read()
asdf1 [G:01:V:1:36] 444:1 3023:4
"""
with open(serialized_patent_filename, 'w') as f:
for patent in patent_list:
patent_as_string = self._patent_to_string(patent)
f.write(patent_as_string)
self.logger.info("Serialized data to " + serialized_patent_filename)
def _patent_to_string(self, patent):
"""
>>> patent = ('asdf1', [['G', '01', 'V', '1', '36', None]], {'ma': 4, 'al': 1, 'ala': 2, 'a1a': 1, 'kot': 1, 'kota': 3})
>>> bag_of_words._patent_to_string(patent)
'asdf1 [G:01:V:1:36:None] 444:1 3023:4'
"""
classification = "[" + ' '.join(
map(':'.join, [map(str, x) for x in patent[1]])) + ']'
wordcount = {
self.dictionary[key]: value
for (key, value) in patent[2].iteritems() if key in self.dictionary
}
wordcount_as_string = ' '.join(
[str(x[0]) + ":" + str(x[1]) for x in wordcount.iteritems()])
return patent[0] + " " + classification + " " + wordcount_as_string
@staticmethod
def _load_patent_list(f):
return cPickle.load(f)
@staticmethod
def _load_dictionary(dictionary_name):
dictionary = {}
index = 0
with open(dictionary_name, 'r') as f:
for line in f:
dictionary[line.strip()] = index
index += 1
return dictionary
def __init__(self):
self.wordcount = WordCount()
self.wordcount_dictionary = {}
class BagOfWords():
def __init__(self, dictionary_name):
"""
>>> bag_of_words.dictionary #doctest: +ELLIPSIS
{..., 'herbicid': 2724, 'silica': 1072, 'phosphat': 1499}
"""
self.dictionary = self._load_dictionary(dictionary_name)
self.wordcount = WordCount()
@log_timer
def parse_all(self, patents_directory, destination_directory, package_size):
patents_list = []
package_index = 1
Supervisor._create_directory_if_not_exists(destination_directory)
for filename in os.listdir(patents_directory):
patent_filename = patents_directory + os.sep + filename
self.logger.info("Opening file with serialized patents: " + patent_filename)
patents_list += self.parse_one_file(patent_filename)
if len(patents_list) > package_size:
serialized_patent_filename = destination_directory + os.sep + "ml-patents_" + str(package_index)
self._serialize_patent_list(serialized_patent_filename, patents_list[:package_size])
package_index += 1
patents_list = patents_list[package_size:]
serialized_patent_filename = destination_directory + os.sep + "ml-patents_" + str(package_index)
self._serialize_patent_list(serialized_patent_filename, patents_list[:package_size])
@log_timer
def parse_one_file(self, filename):
"""
>>> serialized_patents = resource_filename("patent_parsing_tools.bow.tests", "xml_tuple_short")
>>> bag_of_words.parse_one_file(serialized_patents) #doctest: +ELLIPSIS
[('08923091', [['G', '01', 'V', '1', '36'], ['G', '01', 'S', '7', '28'], ['G', '01', 'S', '7', '292']], {'invent': 7, ...})]
"""
parsed_patent_list = []
with open(filename, 'rb') as f:
patent_list = self._load_patent_list(f)
for patent in patent_list:
parsed_patent_list.append(self._parse_patent(patent))
return parsed_patent_list
def _parse_patent(self, patent):
"""
>>> patent = Patent()
>>> patent.title = "ala ma kota"
>>> patent.abstract = "ala ma kota"
>>> patent.description = "a1a ma kota"
>>> patent.claims = "kot ma alę"
>>> patent.documentID = "asdf1"
>>> patent.classification = [['G', '01', 'V', '1', '36']]
>>> bag_of_words._parse_patent(patent)
('asdf1', [['G', '01', 'V', '1', '36']], {'ma': 4, 'al': 1, 'ala': 2, 'a1a': 1, 'kot': 1, 'kota': 3})
"""
dictionary = self.wordcount.parse_text(patent.title)
dictionary = self.wordcount.parse_text(patent.abstract, dictionary)
dictionary = self.wordcount.parse_text(patent.description, dictionary)
dictionary = self.wordcount.parse_text(patent.claims, dictionary)
patent.classification
return patent.documentID, patent.classification, dictionary
def _serialize_patent_list(self, serialized_patent_filename, patent_list):
"""
>>> patent_list = [('asdf1', [['G', '01', 'V', '1', '36']], {'ma': 4, 'al': 1, 'ala': 2, 'a1a': 1, 'kot': 1, 'kota': 3})]
>>> bag_of_words._serialize_patent_list("./final_serialized_patent", patent_list)
>>> with open("./final_serialized_patent", 'r') as fin:
... print fin.read()
asdf1 [G:01:V:1:36] 444:1 3023:4
"""
with open(serialized_patent_filename, 'w') as f:
for patent in patent_list:
patent_as_string = self._patent_to_string(patent)
f.write(patent_as_string)
self.logger.info("Serialized data to " + serialized_patent_filename)
def _patent_to_string(self, patent):
"""
>>> patent = ('asdf1', [['G', '01', 'V', '1', '36', None]], {'ma': 4, 'al': 1, 'ala': 2, 'a1a': 1, 'kot': 1, 'kota': 3})
>>> bag_of_words._patent_to_string(patent)
'asdf1 [G:01:V:1:36:None] 444:1 3023:4'
"""
classification = "[" + ' '.join(map(':'.join, [map(str, x) for x in patent[1]])) + ']'
wordcount = {self.dictionary[key]: value for (key, value) in patent[2].iteritems() if key in self.dictionary}
wordcount_as_string = ' '.join([str(x[0]) + ":" + str(x[1]) for x in wordcount.iteritems()])
return patent[0] + " " + classification + " " + wordcount_as_string
@staticmethod
def _load_patent_list(f):
return cPickle.load(f)
@staticmethod
def _load_dictionary(dictionary_name):
dictionary = {}
index = 0
with open(dictionary_name, 'r') as f:
for line in f:
dictionary[line.strip()] = index
index += 1
return dictionary