Python write_subreadset_chunks_to_file Examples

Programming Language: Python

Namespace/Package Name: pbcoretools.chunking.chunk_utils

Method/Function: write_subreadset_chunks_to_file

Examples at hotexamples.com: 4

Python write_subreadset_chunks_to_file - 4 examples found. These are the top rated real world Python examples of pbcoretools.chunking.chunk_utils.write_subreadset_chunks_to_file extracted from open source projects. You can rate examples to help us improve the quality of examples.

Example #1

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def _args_run_chunk_subreadset(args):
    return CU.write_subreadset_chunks_to_file(args.chunk_report_json,
                                              args.subreadset, args.fasta,
                                              args.max_total_chunks,
                                              args.output_dir,
                                              "chunk_subreadset",
                                              FileTypes.DS_SUBREADS.ext)

Example #2

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File: scatter_subread_reference.py Project: mpkocher/pbcoretools

def run_main(chunk_output_json, subread_xml, reference_set_xml, max_nchunks, output_dir):
    return CU.write_subreadset_chunks_to_file(chunk_output_json,
                                              subread_xml,
                                              reference_set_xml,
                                              max_nchunks,
                                              output_dir,
                                              "chunk_subreadset",
                                              FileTypes.DS_SUBREADS.ext)

Example #3

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File: chunker.py Project: Debian/pbcoretools

def _args_run_chunk_subreadset(args):
    return CU.write_subreadset_chunks_to_file(args.chunk_report_json,
                                              args.subreadset,
                                              args.fasta,
                                              args.max_total_chunks,
                                              args.output_dir,
                                              "chunk_subreadset",
                                              FileTypes.DS_SUBREADS.ext)

Example #4

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File: scatter_subread_reference.py Project: pezmaster31/pbcoretools

def run_main(chunk_output_json, subread_xml, reference_set_xml, max_nchunks,
             output_dir):
    return CU.write_subreadset_chunks_to_file(chunk_output_json, subread_xml,
                                              reference_set_xml, max_nchunks,
                                              output_dir, "chunk_subreadset",
                                              FileTypes.DS_SUBREADS.ext)