Python run_main_gather_alignmentset Examples

Example #1

File: gather_alignments.py Project: pezmaster31/pbcoretools

def rtc_runner(rtc):
    return run_main_gather_alignmentset(
        chunk_input_json=rtc.task.input_files[0],
        output_file=rtc.task.output_files[0],
        chunk_key=rtc.task.chunk_key,
        consolidate=False)

Example #2

File: gather_alignments.py Project: pezmaster31/pbcoretools

def args_runner(args):
    return run_main_gather_alignmentset(chunk_input_json=args.cjson_in,
                                        output_file=args.ds_out,
                                        chunk_key=args.chunk_key,
                                        consolidate=False)

Example #3

File: gather_alignments.py Project: mpkocher/pbcoretools

def args_runner(args):
    return run_main_gather_alignmentset(
        chunk_input_json=args.cjson_in,
        output_file=args.ds_out,
        chunk_key=args.chunk_key,
        consolidate=False)#args.consolidate,

Example #4

File: gather_alignments.py Project: mpkocher/pbcoretools

def rtc_runner(rtc):
    return run_main_gather_alignmentset(
        chunk_input_json=rtc.task.input_files[0],
        output_file=rtc.task.output_files[0],
        chunk_key=rtc.task.chunk_key,
        consolidate=False)#rtc.task.options[Constants.CONSOLIDATE_ID],

Example #5

File: gather_alignments.py Project: Debian/pbcoretools

def rtc_runner(rtc):
    return run_main_gather_alignmentset(
        chunk_input_json=rtc.task.input_files[0],
        output_file=rtc.task.output_files[0],
        chunk_key=rtc.task.chunk_key,
        consolidate=False)