Python CmpH5Sort.computeRefIndexTable Examples

Example #1

File: test_cmph5lib_CmpH5Sort.py Project: PacificBiosciences/pbh5tools

 def test_compute_ref_index_table(self):
     refIDs = [5,1,1,1,1,1,1,1,1,1,2,2,2,2,2]
     tbl    = CS.computeRefIndexTable(array(refIDs))
     utbl   = [ 5, 0, 1,
                1, 1, 10,
                2, 10, 15 ]
     assert_equal(sum(tbl.ravel() == utbl), len(utbl))

Example #2

File: test_cmph5lib_CmpH5Sort.py Project: reiverjohn/pbh5tools

 def test_compute_ref_index_table(self):
     refIDs = [5, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2]
     tbl = CS.computeRefIndexTable(array(refIDs))
     utbl = [5, 0, 1, 1, 1, 10, 2, 10, 15]
     assert_equal(sum(tbl.ravel() == utbl), len(utbl))