Python write_dummy_file Examples

Example #1

File: clean_consensus.py Project: PacificBiosciences/rDnaTools

def clean_consensus_outputs( dir_path, output_file ):
    for filename in os.listdir( dir_path ):
        file_path = os.path.join( dir_path, filename )
        if file_path.endswith('_input.fa'):
            os.remove( file_path )
        elif file_path.endswith('_input.fa.aln'):
            os.remove( file_path )
        elif file_path.endswith('_input.fa.aln_unsorted'):
            os.remove( file_path )
    write_dummy_file( output_file )

Example #2

def clean_consensus_outputs(dir_path, output_file):
    for filename in os.listdir(dir_path):
        file_path = os.path.join(dir_path, filename)
        if file_path.endswith('_input.fa'):
            os.remove(file_path)
        elif file_path.endswith('_input.fa.aln'):
            os.remove(file_path)
        elif file_path.endswith('_input.fa.aln_unsorted'):
            os.remove(file_path)
    write_dummy_file(output_file)

Example #3

File: rDnaPipeline.py Project: smiles0530/rDnaTools

 def cleanup_uchime_output(self, screenedFile):
     outputFile = self.process_setup(screenedFile,
                                     'UchimeCleanup',
                                     suffix='uchime.cleanup')
     uchimePath = os.getcwd()
     for filename in os.listdir(uchimePath):
         if filename.endswith('_formatted'):
             file_path = os.path.join(uchimePath, filename)
             os.remove(file_path)
     write_dummy_file(outputFile)
     self.process_cleanup(output_file=outputFile)
     return outputFile

Example #4

File: rDnaPipeline.py Project: PacificBiosciences/rDnaTools

 def cleanup_uchime_output( self, screenedFile ):
     outputFile = self.process_setup( screenedFile,
                                      'UchimeCleanup',
                                      suffix='uchime.cleanup' )
     uchimePath = os.getcwd()
     for filename in os.listdir( uchimePath ):
         if filename.endswith('_formatted'):
             file_path = os.path.join( uchimePath, filename )
             os.remove( file_path )
     write_dummy_file( outputFile )
     self.process_cleanup(output_file=outputFile)
     return outputFile