def test_attrs(self):
"""
Create all report attributes, test values
"""
c_reads = self._data[CONTROL_READS][1]
f_reads = self._data[FILTERED_READS]
control_data, sample_data = _process_reads(c_reads, f_reads)
n_control = control_data.shape[1]
n_sample = sample_data.shape[1]
self.assertEqual(333, _get_attr_n_control_reads(n_control).value)
self.assertEqual(0.01235759082643708,
_get_attr_fraction_control_reads(n_control,
n_sample).value)
self.assertEqual(0.84888366464380027,
_get_attr_control_subread_acc(control_data).value)
self.assertEqual(2468,
_get_attr_control_mean_readlength(control_data).value)
self.assertEqual(7804,
_get_attr_control_95_readlength(control_data).value)
self.assertEqual(3912, _get_attr_n50(control_data).value)
def test_attrs(self):
"""
Create all report attributes, test values
"""
c_reads = self._data[CONTROL_READS][1]
f_reads = self._data[FILTERED_READS]
control_data, sample_data = _process_reads(c_reads, f_reads)
n_control = control_data.shape[1]
n_sample = sample_data.shape[1]
self.assertEqual(333, _get_attr_n_control_reads(n_control).value)
self.assertEqual(
0.01235759082643708,
_get_attr_fraction_control_reads(n_control, n_sample).value)
self.assertEqual(0.84888366464380027,
_get_attr_control_subread_acc(control_data).value)
self.assertEqual(2468,
_get_attr_control_mean_readlength(control_data).value)
self.assertEqual(7804,
_get_attr_control_95_readlength(control_data).value)
self.assertEqual(3912, _get_attr_n50(control_data).value)
def test_create_length_figure(self):
"""
Test that the length figure obj is not None
"""
c_reads = self._data[CONTROL_READS][1]
f_reads = self._data[FILTERED_READS]
control_data, sample_data = _process_reads(c_reads, f_reads)
fig = _create_length_figure(control_data, sample_data)
self.assertIsNotNone(fig)
def test_create_length_figure(self):
"""
Test that the length figure obj is not None
"""
c_reads = self._data[CONTROL_READS][1]
f_reads = self._data[FILTERED_READS]
control_data, sample_data = _process_reads(c_reads, f_reads)
fig = _create_length_figure(control_data, sample_data)
self.assertIsNotNone(fig)
def test_process_reads(self):
"""
Assert length of sample and control arrays
"""
c_reads = self._data[CONTROL_READS][1]
f_reads = self._data[FILTERED_READS]
control_data, sample_data = _process_reads(c_reads, f_reads)
self.assertTrue(len(control_data[0]) == len(control_data[1]) == len(
control_data[2]) == len(control_data[3]))
self.assertEqual(333, len(control_data[0]))
self.assertEqual(26614, len(sample_data[0]))
def test_process_reads(self):
"""
Assert length of sample and control arrays
"""
c_reads = self._data[CONTROL_READS][1]
f_reads = self._data[FILTERED_READS]
control_data, sample_data = _process_reads(c_reads, f_reads)
self.assertTrue(
len(control_data[0]) == len(control_data[1]) == len(
control_data[2]) == len(control_data[3]))
self.assertEqual(333, len(control_data[0]))
self.assertEqual(26614, len(sample_data[0]))