Python write_fofn Examples

Example #1

def run_random_fofn(output_fofn, output_dir, nfofns):

    fofns = []
    for i in xrange(nfofns):
        name = "random_{i}".format(i=i)
        file_name = ".".join([name, 'fofn'])
        p = os.path.join(output_dir, file_name)
        with open(p, 'w+') as w:
            w.write(name)
        fofns.append(p)

    M.write_fofn(output_fofn, fofns)
    return 0

Example #2

File: dev.py Project: knyquist/pbsmrtpipe

def run_random_fofn(output_fofn, output_dir, nfofns):

    fofns = []
    for i in xrange(nfofns):
        name = "random_{i}".format(i=i)
        file_name = ".".join([name, 'fofn'])
        p = os.path.join(output_dir, file_name)
        with open(p, 'w+') as w:
            w.write(name)
        fofns.append(p)

    M.write_fofn(output_fofn, fofns)
    return 0