Python write_hdfsubreadset_chunks_to_file Examples

Example #1

File: chunker.py Project: pombredanne/pbsmrtpipe

def _args_run_chunk_hdfsubreadset(args):
    return CU.write_hdfsubreadset_chunks_to_file(args.chunk_report_json,
                                                 args.hdfsubreadset,
                                                 args.max_total_chunks,
                                                 args.output_dir,
                                                 "chunk_hdfsubreadset",
                                                 FileTypes.DS_SUBREADS_H5.ext)

Example #2

File: scatter_hdfsubreads.py Project: yqin22/pbsmrtpipe

def run_main(chunk_output_json, hdfsubread_xml, max_nchunks, output_dir):
    return CU.write_hdfsubreadset_chunks_to_file(
        chunk_output_json, hdfsubread_xml, max_nchunks, output_dir, "chunk_hdfsubreadset", "xml"
    )

Example #3

def _args_run_chunk_hdfsubreadset(args):
    return CU.write_hdfsubreadset_chunks_to_file(args.chunk_report_json,
                                                 args.hdfsubreadset,
                                                 args.max_total_chunks,
                                                 args.output_dir,
                                                 "chunk_hdfsubreadset", 'xml')

Example #4

File: chunker.py Project: yqin22/pbsmrtpipe

def _args_run_chunk_hdfsubreadset(args):
    return CU.write_hdfsubreadset_chunks_to_file(args.chunk_report_json,
                                                 args.hdfsubreadset,
                                                 args.max_total_chunks,
                                                 args.output_dir,
                                                 "chunk_hdfsubreadset", 'xml')

Example #5

def _args_run_chunk_hdfsubreadset(args):
    return CU.write_hdfsubreadset_chunks_to_file(
        args.chunk_report_json, args.hdfsubreadset, args.max_total_chunks,
        args.output_dir, "chunk_hdfsubreadset", FileTypes.DS_SUBREADS_H5.ext)

Example #6

File: scatter_hdfsubreads.py Project: skinner/pbsmrtpipe

def run_main(chunk_output_json, hdfsubread_xml, max_nchunks, output_dir):
    return CU.write_hdfsubreadset_chunks_to_file(chunk_output_json,
                                                 hdfsubread_xml, max_nchunks,
                                                 output_dir,
                                                 "chunk_hdfsubreadset",
                                                 FileTypes.DS_SUBREADS_H5.ext)

Example #7

def run_main(chunk_output_json, hdfsubread_xml, max_nchunks, output_dir):
    return CU.write_hdfsubreadset_chunks_to_file(chunk_output_json, hdfsubread_xml,
                                                 max_nchunks,
                                                 output_dir,
                                                 "chunk_hdfsubreadset", 'xml')

Example #8

File: scatter_hdfsubreads.py Project: pombredanne/pbsmrtpipe

def run_main(chunk_output_json, hdfsubread_xml, max_nchunks, output_dir):
    return CU.write_hdfsubreadset_chunks_to_file(chunk_output_json, hdfsubread_xml,
                                                 max_nchunks,
                                                 output_dir,
                                                 "chunk_hdfsubreadset",
                                                 FileTypes.DS_SUBREADS_H5.ext)