Python write_subreadset_zmw_chunks_to_file Examples

Example #1

File: scatter_subread_zmws.py Project: yqin22/pbsmrtpipe

def run_main(chunk_output_json, subread_xml, max_nchunks, output_dir):
    return CU.write_subreadset_zmw_chunks_to_file(
        chunk_file=chunk_output_json,
        subreadset_path=subread_xml,
        max_total_chunks=max_nchunks,
        dir_name=output_dir,
        chunk_base_name="chunk_subreadset",
        chunk_ext='xml')

Example #2

File: scatter_subread_zmws.py Project: pombredanne/pbsmrtpipe

def run_main(chunk_output_json, dataset_xml, max_nchunks, output_dir):
    return CU.write_subreadset_zmw_chunks_to_file(
        chunk_file=chunk_output_json,
        dataset_path=dataset_xml,
        max_total_chunks=max_nchunks,
        dir_name=output_dir,
        chunk_base_name="chunk_dataset",
        chunk_ext=FileTypes.DS_SUBREADS.ext)

Example #3

def run_main(chunk_output_json, subread_xml, max_nchunks, output_dir):
    return CU.write_subreadset_zmw_chunks_to_file(
        chunk_file=chunk_output_json,
        subreadset_path=subread_xml,
        max_total_chunks=max_nchunks,
        dir_name=output_dir,
        chunk_base_name="chunk_subreadset",
        chunk_ext='xml')

Example #4

def run_main(chunk_output_json, dataset_xml, max_nchunks, output_dir):
    return CU.write_subreadset_zmw_chunks_to_file(
        chunk_file=chunk_output_json,
        dataset_path=dataset_xml,
        max_total_chunks=max_nchunks,
        dir_name=output_dir,
        chunk_base_name="chunk_dataset",
        chunk_ext=FileTypes.DS_SUBREADS.ext)