def test_parse_feature_data_3(self):
"""Verify that Cds objects are constructed correctly for multiple
valid PhageID when the phage_id parameter is not specified."""
cds_list = mysqldb.parse_feature_data(self.engine,
"cds",
query=GENE_QUERY)
with self.subTest():
self.assertEqual(len(cds_list), 4)
def test_parse_feature_data_2(self):
"""Verify that an empty Cds object list is constructed for an
invalid PhageID."""
cds_list = mysqldb.parse_feature_data(self.engine,
"cds",
column="PhageID",
phage_id_list=["L5"],
query=GENE_QUERY)
self.assertEqual(len(cds_list), 0)
def test_parse_feature_data_6(self):
"""Verify that a dictionary is returned for an invalid feature type."""
ftr_list = mysqldb.parse_feature_data(self.engine,
"invalid",
column="PhageID",
phage_id_list=["Trixie"],
query=TMRNA_QUERY)
with self.subTest():
self.assertEqual(len(ftr_list), 1)
with self.subTest():
self.assertIsInstance(ftr_list[0], dict)
def test_parse_feature_data_5(self):
"""Verify that a Tmrna object is constructed correctly for a
valid PhageID."""
ftr_list = mysqldb.parse_feature_data(self.engine,
"tmrna",
column="PhageID",
phage_id_list=["Trixie"],
query=TMRNA_QUERY)
with self.subTest():
self.assertEqual(len(ftr_list), 1)
with self.subTest():
self.assertEqual(ftr_list[0].id, "Trixie_6")
with self.subTest():
self.assertEqual(ftr_list[0].genome_id, "Trixie")
def test_parse_feature_data_1(self):
"""Verify that a Cds object is constructed correctly for a
valid PhageID."""
cds_list = mysqldb.parse_feature_data(self.engine,
"cds",
column="PhageID",
phage_id_list=["Trixie"],
query=GENE_QUERY)
with self.subTest():
self.assertEqual(len(cds_list), 3)
with self.subTest():
self.assertEqual(cds_list[0].id, "Trixie_1")
with self.subTest():
self.assertEqual(cds_list[0].genome_id, "Trixie")