Python kmcgraph_from_rates Examples

Example #1

File: test_graph_transformation.py Project: borislavujo/pele

 def run(self):
     nnodes = len(self.nodes)
     if self.node_set is not None:
         # add edges until u and v are connected    
         while not self.node_set_connected():
             self.add_random_edge()
     nedges = min(self.nedges, nnodes*(nnodes-1))
     while(len(self.rates) < nedges):
         self.add_random_edge()
     print "made random graph with", len(self.nodes), "nodes and", len(self.rates) / 2, "edges"
     return kmcgraph_from_rates(self.rates)

Example #2

def _three_state_graph():
    return kmcgraph_from_rates(_three_state_rates())

Example #3

 def run(self):
     self.make_rates()
     return kmcgraph_from_rates(self.rates)

Example #4

File: test_graph_transformation.py Project: Mahdisadjadi/pele

def _three_state_graph():
    return kmcgraph_from_rates(_three_state_rates())

Example #5

File: test_graph_transformation.py Project: Mahdisadjadi/pele

 def run(self):
     self.make_rates()
     return kmcgraph_from_rates(self.rates)