def work_get(work_id=''):
"""
Get a work
swagger_from_file: api_doc/work_get.yml
"""
result = persistence.get_work(work_id)
if result:
thedata = json.loads(result.get('wtf_json'))
resp = make_response(json.dumps(thedata, indent=4), 200)
resp.headers['Content-Type'] = 'application/json'
return resp
else:
resp = make_response(
'NOT FOUND: work resource \'%s\' not found!' % work_id, 404)
resp.headers['Content-Type'] = 'text/plain'
return resp
def work_put(work_id=''):
"""
Update an existing work
swagger_from_file: api_doc/work_put.yml
"""
if request.headers.get('Content-Type') == 'application/json':
if is_token_valid(request.headers.get('Authorization')):
result = persistence.get_work(work_id)
if result:
original_work = json.loads(result.get('wtf_json'))
addition_work = ''
try:
addition_work = json.loads(request.data.decode("utf-8"))
# print(addition_work)
except:
pass
if addition_work:
if addition_work.get('id') and addition_work.get(
'id') != original_work.get('id'):
return make_response(
'Conflict: The ID of the additional data already exists as "same_as"! Please check your data!',
409)
else:
# init merger "work"
with open(
'conf/works_merger.schema.json') as data_file:
schema_works_merger = json.load(data_file)
merger = Merger(schema_works_merger)
# merge it!
merged_work = merger.merge(original_work,
addition_work)
# print(json.dumps(merged_work, indent=4))
# load it!
form = display_vocabularies.PUBTYPE2FORM.get(
merged_work.get('pubtype')).from_json(merged_work)
form.changed.data = timestamp()
# store it
rel = str2bool(request.args.get('rel', 'true'))
new_id, message = persistence.record2solr(
form, action='update', relitems=rel)
response_json = {
"message": message,
"work": merged_work
}
return make_response(
json.dumps(response_json, indent=4), 200)
else:
# load it!
form = display_vocabularies.PUBTYPE2FORM.get(
original_work.get('pubtype')).from_json(original_work)
form.changed.data = timestamp()
# store it
rel = str2bool(request.args.get('rel', 'true'))
new_id, message = persistence.record2solr(form,
action='update',
relitems=rel)
response_json = {"message": message, "work": original_work}
return make_response(json.dumps(response_json, indent=4),
200)
else:
return make_response(
'work resource \'%s\' not found!' % work_id, 404)
else:
return make_response('Unauthorized', 401)
else:
return make_response('Bad request: invalid accept header!', 400)
def work_post():
"""
Create a new work
swagger_from_file: api_doc/work_post.yml
"""
if request.headers.get('Content-Type') == 'application/json':
if request.headers.get('Authorization'):
if is_token_valid(request.headers.get('Authorization')):
thedata = request.data.decode("utf-8")
result = persistence.get_work(json.loads(thedata).get('id'))
rel = str2bool(request.args.get('rel', 'true'))
if result:
# TODO if force=true and existing id not equals posted id: add data
force = str2bool(request.args.get('force', 'false'))
rewrite = str2bool(request.args.get('rewrite', 'false'))
if (force and json.loads(thedata).get('id') != json.loads(
result.get('wtf_json')).get('id')) or rewrite:
form = display_vocabularies.PUBTYPE2FORM.get(
json.loads(thedata).get('pubtype')).from_json(
json.loads(thedata))
form.created.data = timestamp()
form.changed.data = timestamp()
new_id, message = persistence.record2solr(
form, action='create', relitems=rel)
message.append('record forced: %s' %
json.loads(thedata).get('id'))
result = persistence.get_work(new_id)
if result:
response_json = {
"message": message,
"work": json.loads(result.get('wtf_json'))
}
return make_response(
json.dumps(response_json, indent=4), 201)
else:
response_json = {
"message": "failed! record not indexed!",
"work": json.loads(thedata)
}
return make_response(
json.dumps(response_json, indent=4), 500)
else:
return make_response(
'Bad request: work already exist!', 400)
else:
form = display_vocabularies.PUBTYPE2FORM.get(
json.loads(thedata).get('pubtype')).from_json(
json.loads(thedata))
form.created.data = timestamp()
form.changed.data = timestamp()
new_id, message = persistence.record2solr(form,
action='create',
relitems=rel)
result = persistence.get_work(new_id)
if result:
response_json = {
"message": message,
"work": json.loads(result.get('wtf_json'))
}
return make_response(
json.dumps(response_json, indent=4), 201)
else:
response_json = {
"message": "failed! record not indexed!",
"work": json.loads(thedata)
}
return make_response(
json.dumps(response_json, indent=4), 500)
else:
return make_response('Unauthorized', 401)
else:
return make_response('Unauthorized', 401)
else:
return make_response('Bad request: invalid accept header!', 400)
def export_openapc(year=''):
'''
Getting a bibliography
swagger_from_file: api_doc/export_openapc.yml
'''
if theme(request.access_route) == 'dortmund':
affiliation = 'tudo'
affiliation_str = 'TU Dortmund'
elif theme(request.access_route) == 'bochum':
affiliation = 'rubi'
affiliation_str = 'Ruhr-Universität Bochum'
else:
affiliation = ''
affiliation_str = ''
if affiliation:
csv = '"institution";"period";"euro";"doi";"is_hybrid";"publisher";"journal_full_title";"issn";"url";"local_id"\n'
oa_solr = Solr(host=secrets.SOLR_HOST,
port=secrets.SOLR_PORT,
application=secrets.SOLR_APP,
core='hb2',
handler='query',
query='oa_funds:true',
facet='false',
rows=100000,
fquery=['%s:true' % affiliation,
'fdate:%s' % year])
oa_solr.request()
results = oa_solr.results
if len(results) > 0:
for record in results:
thedata = json.loads(record.get('wtf_json'))
doi = record.get('doi')[0]
is_hybrid = False
if record.get('is_hybrid'):
is_hybrid = record.get('is_hybrid')
publisher = ''
journal_title = ''
issn = ''
url = ''
if not doi:
journal_title = ''
if record.get('is_part_of_id'):
if record.get('is_part_of_id')[0]:
host = persistence.get_work(
record.get('is_part_of_id')[0])
if host:
record = json.loads(host.get('wtf_json'))
# print(json.dumps(record, indent=4))
journal_title = record.get('title')
if record.get('fsubseries'):
journal_title = record.get('fsubseries')
publisher = ''
if record.get('publisher'):
publisher = record.get('publisher')
issn = ''
if record.get('ISSN'):
for entry in record.get('ISSN'):
if entry:
issn = entry
break
url = ''
if thedata.get('uri'):
for uri in thedata.get('uri'):
url = uri
break
csv += '"%s";%s;%s;"%s";"%s";"%s";"%s";"%s";"%s";"%s"\n' % (
affiliation_str, year, 0.00, doi, is_hybrid, publisher,
journal_title, issn, url, record.get('id'))
resp = make_response(csv, 200)
resp.headers['Content-Type'] = 'text/csv; charset=utf-8'
return resp
else:
return make_response('No results', 404)
else:
return make_response(
'No affiliation parameter set. Please contact the administrator!',
400)
def export_oa_report(year=''):
'''
Getting a bibliography
swagger_from_file: api_doc/export_oa_report.yml
'''
pubtype = request.args.get('pubtype', 'ArticleJournal')
if theme(request.access_route) == 'dortmund':
affiliation = 'tudo'
affiliation_str = 'TU Dortmund'
elif theme(request.access_route) == 'bochum':
affiliation = 'rubi'
affiliation_str = 'Ruhr-Universität Bochum'
else:
affiliation = ''
affiliation_str = ''
if affiliation:
csv = '"AU";"TI";"SO";"DT";"RP";"EM";"OI";"PU";"ISSN";"E-ISSN";"DOI";"OA";"RP TUDO";"Fak"\n'
# TODO search for all publications of the given year
oa_solr = Solr(host=secrets.SOLR_HOST,
port=secrets.SOLR_PORT,
application=secrets.SOLR_APP,
core='hb2',
handler='query',
query='*:*',
facet='false',
rows=100000,
fquery=[
'%s:true' % affiliation,
'fdate:%s' % year,
'pubtype:%s' % pubtype
])
oa_solr.request()
results = oa_solr.results
if results:
for record in results:
thedata = json.loads(record.get('wtf_json'))
author = ''
corresponding_author = ''
corresponding_affiliation = ''
faks = ''
for person in thedata.get('person'):
if 'aut' in person.get('role'):
author += person.get('name') + ';'
if person.get('corresponding_author'):
corresponding_author = person.get('name')
if person.get('tudo'):
corresponding_affiliation = True
if person.get('gnd'):
tudo = persistence.get_person(
person.get('gnd'))
# print(person.get('gnd'))
if tudo:
if tudo.get('affiliation_id'):
faks = ''
for entry in tudo.get(
'affiliation_id'):
affil = persistence.get_orga(
entry)
fak = ''
if affil:
has_parent = False
fak = affil.get(
'pref_label')
if affil.get('parent_id'):
has_parent = True
fak = '%s / %s' % (
affil.get(
'parent_label'
),
affil.get(
'pref_label'))
while has_parent:
affil = persistence.get_orga(
affil.get(
'parent_id'))
if affil.get(
'parent_id'):
has_parent = True
fak = '%s / %s' % (
affil.get(
'parent_label'
),
affil.get(
'pref_label'
))
else:
has_parent = False
else:
fak = 'LinkError: Person %s' % person.get(
'gnd')
faks += fak + ';'
faks = faks[:-1]
author = author[:-1]
publisher = ''
journal_title = ''
issn = ''
journal_title = ''
if record.get('is_part_of_id'):
if record.get('is_part_of_id')[0]:
host = persistence.get_work(
record.get('is_part_of_id')[0])
if host:
record = json.loads(host.get('wtf_json'))
# print(json.dumps(record, indent=4))
journal_title = record.get('title')
if record.get('fsubseries'):
journal_title = record.get('fsubseries')
publisher = ''
if record.get('publisher'):
publisher = record.get('publisher')
issn = ''
if record.get('ISSN'):
for entry in record.get('ISSN'):
if entry:
issn = entry
break
csv += '"%s";"%s";"%s";"%s";"%s";"%s";"%s";"%s";"%s";"%s";"%s";"%s";"%s";"%s"\n' % (
author,
thedata.get('title'),
journal_title,
'article',
corresponding_author,
'',
'',
publisher,
issn,
'',
thedata.get('DOI')[0],
thedata.get('oa_funded'),
corresponding_affiliation,
faks,
)
resp = make_response(csv, 200)
resp.headers['Content-Type'] = 'text/csv; charset=utf-8'
return resp
else:
return make_response(
'No affiliation parameter set. Please contact the administrator!',
400)