def test_intervaljoins_faceted_compound():
left = (('fruit', 'sort', 'begin', 'end'),
('apple', 'cox', 1, 2),
('apple', 'fuji', 2, 4))
right = (('type', 'variety', 'start', 'stop', 'value'),
('apple', 'cox', 1, 4, 'foo'),
('apple', 'fuji', 3, 7, 'bar'),
('orange', 'mandarin', 4, 9, 'baz'))
expect = (('fruit', 'sort', 'begin', 'end', 'type', 'variety', 'start',
'stop', 'value'),
('apple', 'cox', 1, 2, 'apple', 'cox', 1, 4, 'foo'),
('apple', 'fuji', 2, 4, 'apple', 'fuji', 3, 7, 'bar'))
actual = intervaljoin(left, right, lstart='begin', lstop='end',
rstart='start', rstop='stop',
lkey=('fruit', 'sort'),
rkey=('type', 'variety'))
ieq(expect, actual)
ieq(expect, actual)
actual = intervalleftjoin(left, right, lstart='begin', lstop='end',
rstart='start', rstop='stop',
lkey=('fruit', 'sort'),
rkey=('type', 'variety'))
ieq(expect, actual)
ieq(expect, actual)
def test_intervaljoin_prefixes():
left = (('begin', 'end', 'quux'),
(1, 2, 'a'),
(2, 4, 'b'),
(2, 5, 'c'),
(9, 14, 'd'),
(9, 140, 'e'),
(1, 1, 'f'),
(2, 2, 'g'),
(4, 4, 'h'),
(5, 5, 'i'),
(1, 8, 'j'))
right = (('start', 'stop', 'value'),
(1, 4, 'foo'),
(3, 7, 'bar'),
(4, 9, 'baz'))
actual = intervaljoin(left, right,
lstart='begin', lstop='end',
rstart='start', rstop='stop',
lprefix='l_', rprefix='r_')
expect = (('l_begin', 'l_end', 'l_quux', 'r_start', 'r_stop', 'r_value'),
(1, 2, 'a', 1, 4, 'foo'),
(2, 4, 'b', 1, 4, 'foo'),
(2, 4, 'b', 3, 7, 'bar'),
(2, 5, 'c', 1, 4, 'foo'),
(2, 5, 'c', 3, 7, 'bar'),
(2, 5, 'c', 4, 9, 'baz'),
(1, 8, 'j', 1, 4, 'foo'),
(1, 8, 'j', 3, 7, 'bar'),
(1, 8, 'j', 4, 9, 'baz'))
ieq(expect, actual)
ieq(expect, actual)
def test_intervaljoin_faceted():
left = (('fruit', 'begin', 'end'),
('apple', 1, 2),
('apple', 2, 4),
('apple', 2, 5),
('orange', 2, 5),
('orange', 9, 14),
('orange', 19, 140),
('apple', 1, 1),
('apple', 2, 2),
('apple', 4, 4),
('apple', 5, 5),
('orange', 5, 5))
right = (('type', 'start', 'stop', 'value'),
('apple', 1, 4, 'foo'),
('apple', 3, 7, 'bar'),
('orange', 4, 9, 'baz'))
expect = (('fruit', 'begin', 'end', 'type', 'start', 'stop', 'value'),
('apple', 1, 2, 'apple', 1, 4, 'foo'),
('apple', 2, 4, 'apple', 1, 4, 'foo'),
('apple', 2, 4, 'apple', 3, 7, 'bar'),
('apple', 2, 5, 'apple', 1, 4, 'foo'),
('apple', 2, 5, 'apple', 3, 7, 'bar'),
('orange', 2, 5, 'orange', 4, 9, 'baz'))
actual = intervaljoin(left, right, lstart='begin', lstop='end',
rstart='start', rstop='stop', lkey='fruit',
rkey='type')
ieq(expect, actual)
ieq(expect, actual)
def test_intervaljoin():
left = (('begin', 'end', 'quux'),
(1, 2, 'a'),
(2, 4, 'b'),
(2, 5, 'c'),
(9, 14, 'd'),
(9, 140, 'e'),
(1, 1, 'f'),
(2, 2, 'g'),
(4, 4, 'h'),
(5, 5, 'i'),
(1, 8, 'j'))
right = (('start', 'stop', 'value'),
(1, 4, 'foo'),
(3, 7, 'bar'),
(4, 9, 'baz'))
actual = intervaljoin(left, right,
lstart='begin', lstop='end',
rstart='start', rstop='stop')
expect = (('begin', 'end', 'quux', 'start', 'stop', 'value'),
(1, 2, 'a', 1, 4, 'foo'),
(2, 4, 'b', 1, 4, 'foo'),
(2, 4, 'b', 3, 7, 'bar'),
(2, 5, 'c', 1, 4, 'foo'),
(2, 5, 'c', 3, 7, 'bar'),
(2, 5, 'c', 4, 9, 'baz'),
(1, 8, 'j', 1, 4, 'foo'),
(1, 8, 'j', 3, 7, 'bar'),
(1, 8, 'j', 4, 9, 'baz'))
debug(lookall(actual))
ieq(expect, actual)
ieq(expect, actual)
def test_intervaljoins_faceted_compound():
left = (('fruit', 'sort', 'begin', 'end'), ('apple', 'cox', 1, 2),
('apple', 'fuji', 2, 4))
right = (('type', 'variety', 'start', 'stop', 'value'),
('apple', 'cox', 1, 4, 'foo'), ('apple', 'fuji', 3, 7, 'bar'),
('orange', 'mandarin', 4, 9, 'baz'))
expect = (('fruit', 'sort', 'begin', 'end', 'type', 'variety', 'start',
'stop', 'value'), ('apple', 'cox', 1, 2, 'apple', 'cox', 1,
4, 'foo'),
('apple', 'fuji', 2, 4, 'apple', 'fuji', 3, 7, 'bar'))
actual = intervaljoin(left,
right,
lstart='begin',
lstop='end',
rstart='start',
rstop='stop',
lkey=('fruit', 'sort'),
rkey=('type', 'variety'))
ieq(expect, actual)
ieq(expect, actual)
actual = intervalleftjoin(left,
right,
lstart='begin',
lstop='end',
rstart='start',
rstop='stop',
lkey=('fruit', 'sort'),
rkey=('type', 'variety'))
ieq(expect, actual)
ieq(expect, actual)
def test_intervaljoin_faceted():
left = (('fruit', 'begin', 'end'), ('apple', 1, 2), ('apple', 2, 4),
('apple', 2, 5), ('orange', 2, 5), ('orange', 9, 14),
('orange', 19, 140), ('apple', 1, 1), ('apple', 2, 2),
('apple', 4, 4), ('apple', 5, 5), ('orange', 5, 5))
right = (('type', 'start', 'stop', 'value'), ('apple', 1, 4, 'foo'),
('apple', 3, 7, 'bar'), ('orange', 4, 9, 'baz'))
expect = (('fruit', 'begin', 'end', 'type', 'start', 'stop',
'value'), ('apple', 1, 2, 'apple', 1, 4,
'foo'), ('apple', 2, 4, 'apple', 1, 4, 'foo'),
('apple', 2, 4, 'apple', 3, 7,
'bar'), ('apple', 2, 5, 'apple', 1, 4,
'foo'), ('apple', 2, 5, 'apple', 3, 7, 'bar'),
('orange', 2, 5, 'orange', 4, 9, 'baz'))
actual = intervaljoin(left,
right,
lstart='begin',
lstop='end',
rstart='start',
rstop='stop',
lkey='fruit',
rkey='type')
ieq(expect, actual)
ieq(expect, actual)
def test_intervaljoin_prefixes():
left = (('begin', 'end', 'quux'), (1, 2, 'a'), (2, 4, 'b'),
(2, 5, 'c'), (9, 14, 'd'), (9, 140, 'e'), (1, 1, 'f'),
(2, 2, 'g'), (4, 4, 'h'), (5, 5, 'i'), (1, 8, 'j'))
right = (('start', 'stop', 'value'), (1, 4, 'foo'), (3, 7, 'bar'),
(4, 9, 'baz'))
actual = intervaljoin(left,
right,
lstart='begin',
lstop='end',
rstart='start',
rstop='stop',
lprefix='l_',
rprefix='r_')
expect = (('l_begin', 'l_end', 'l_quux', 'r_start', 'r_stop',
'r_value'), (1, 2, 'a', 1, 4, 'foo'),
(2, 4, 'b', 1, 4, 'foo'), (2, 4, 'b', 3, 7, 'bar'),
(2, 5, 'c', 1, 4, 'foo'), (2, 5, 'c', 3, 7, 'bar'),
(2, 5, 'c', 4, 9, 'baz'), (1, 8, 'j', 1, 4, 'foo'),
(1, 8, 'j', 3, 7, 'bar'), (1, 8, 'j', 4, 9, 'baz'))
ieq(expect, actual)
ieq(expect, actual)
def test_intervaljoin_include_stop():
left = (('begin', 'end', 'quux'), (1, 2, 'a'), (2, 4, 'b'),
(2, 5, 'c'), (9, 14, 'd'), (9, 140, 'e'), (1, 1, 'f'),
(2, 2, 'g'), (4, 4, 'h'), (5, 5, 'i'), (1, 8, 'j'))
right = (('start', 'stop', 'value'), (1, 4, 'foo'), (3, 7, 'bar'),
(4, 9, 'baz'))
actual = intervaljoin(left,
right,
lstart='begin',
lstop='end',
rstart='start',
rstop='stop',
include_stop=True)
expect = (('begin', 'end', 'quux', 'start', 'stop', 'value'),
(1, 2, 'a', 1, 4, 'foo'), (2, 4, 'b', 1, 4, 'foo'),
(2, 4, 'b', 3, 7, 'bar'), (2, 4, 'b', 4, 9, 'baz'),
(2, 5, 'c', 1, 4, 'foo'), (2, 5, 'c', 3, 7,
'bar'), (2, 5, 'c', 4, 9, 'baz'),
(9, 14, 'd', 4, 9, 'baz'), (9, 140, 'e', 4, 9,
'baz'), (1, 1, 'f', 1, 4, 'foo'),
(2, 2, 'g', 1, 4, 'foo'), (4, 4, 'h', 1, 4,
'foo'), (4, 4, 'h', 3, 7, 'bar'),
(4, 4, 'h', 4, 9, 'baz'), (5, 5, 'i', 3, 7,
'bar'), (5, 5, 'i', 4, 9, 'baz'),
(1, 8, 'j', 1, 4, 'foo'), (1, 8, 'j', 3, 7,
'bar'), (1, 8, 'j', 4, 9, 'baz'))
ieq(expect, actual)
ieq(expect, actual)
