def __init__(self, domain, **kwargs):
self._config = kwargs.get('config')
if self._config is None:
self._config = get_config_object()
self._api_vers = self._config.get_from_config_setting_cascade([('apis', 'taxomachine_api_version'),
('apis', 'api_version')],
"2")
self.use_v1 = (self._api_vers == "1")
r = self._config.get_from_config_setting_cascade([('apis', 'taxomachine_raw_urls'),
('apis', 'raw_urls')],
"FALSE")
self._raw_urls = (r.lower() == 'true')
if 'cache_taxa' in kwargs:
cache_taxa = kwargs.get('cache_taxa', False)
else:
cache_taxa = self._config.get_config_setting('apis', 'cache_taxa', 'false').lower() in ['true', '1']
if cache_taxa:
self._ott_id2taxon = {}
else:
self._ott_id2taxon = None
self._contexts = None
self._valid_contexts = None
self.prefix = None
_WSWrapper.__init__(self, domain, **kwargs)
self.domain = domain
self._wr = weakref.proxy(self)
def __init__(self, domain, **kwargs):
self._config = kwargs.get('config')
if self._config is None:
self._config = get_config_object()
self._api_vers = self._config.get_from_config_setting_cascade(
[('apis', 'taxomachine_api_version'),
('apis', 'api_version')], "2")
self.use_v1 = (self._api_vers == "1")
r = self._config.get_from_config_setting_cascade(
[('apis', 'taxomachine_raw_urls'), ('apis', 'raw_urls')], "FALSE")
self._raw_urls = (r.lower() == 'true')
if 'cache_taxa' in kwargs:
cache_taxa = kwargs.get('cache_taxa', False)
else:
cache_taxa = self._config.get_config_setting(
'apis', 'cache_taxa', 'false').lower() in ['true', '1']
if cache_taxa:
self._ott_id2taxon = {}
else:
self._ott_id2taxon = None
self._contexts = None
self._valid_contexts = None
self.prefix = None
_WSWrapper.__init__(self, domain, **kwargs)
self.domain = domain
self._wr = weakref.proxy(self)
def __init__(self, domain, **kwargs):
self._config = get_config_object(None, **kwargs)
self._api_vers = self._config.get_from_config_setting_cascade(
[('apis', 'taxomachine_api_version'),
('apis', 'api_version')], "2")
self.use_v1 = (self._api_vers == "1")
r = self._config.get_from_config_setting_cascade(
[('apis', 'taxomachine_raw_urls'), ('apis', 'raw_urls')], "FALSE")
self._raw_urls = (r.lower() == 'true')
self._contexts = None
self._valid_contexts = None
self.prefix = None
_WSWrapper.__init__(self, domain, **kwargs)
self.domain = domain
def __init__(self, domain, **kwargs):
self._prefix = None
_WSWrapper.__init__(self, domain, **kwargs)
self.domain = domain
self._github_oauth_token = None
self._get_from = kwargs.setdefault('get_from', 'external').lower()
self._transform = kwargs.setdefault('transform', 'client').lower()
self._refresh = kwargs.setdefault('refresh', 'never').lower()
self._src_code = _GET_FROM_VALUES.index(self._get_from)
self._refresh_code = _REFRESH_VALUES.index(self._refresh)
self._assumed_doc_version = None
self._locals_repo_dict = kwargs.get('locals_repos_dict') # repos_dict arg to Phylesystem() if get_from is local
self._store_config = None
self._docstore_obj = None
self._use_raw = False
def __init__(self, domain, **kwargs):
self._prefix = None
_WSWrapper.__init__(self, domain, **kwargs)
self.domain = domain
self._github_oauth_token = None
self._get_from = kwargs.setdefault('get_from', 'external').lower()
self._transform = kwargs.setdefault('transform', 'client').lower()
self._refresh = kwargs.setdefault('refresh', 'never').lower()
self._src_code = _GET_FROM_VALUES.index(self._get_from)
self._trans_code = _TRANSFORM_VALUES.index(self._transform)
self._refresh_code = _REFRESH_VALUES.index(self._refresh)
self._repo_nexml2json = None
self._phylesystem_config = None
self._phylesystem_obj = None
self._use_raw = False
def __init__(self, domain, **kwargs):
self._config = get_config_object(None, **kwargs)
self._current_synth_info = None
self._current_synth_id = None
self.prefix = None
r = self._config.get_from_config_setting_cascade([('apis', 'treemachine_raw_urls'),
('apis', 'raw_urls')],
"FALSE")
self._raw_urls = (r.lower() == 'true')
self._api_vers = self._config.get_from_config_setting_cascade([('apis', 'treemachine_api_version'),
('apis', 'api_version')],
"2")
self.use_v1 = (self._api_vers == "1")
_WSWrapper.__init__(self, domain, **kwargs)
self.domain = domain
def __init__(self, domain, **kwargs):
self._config = get_config_object(None, **kwargs)
self._api_vers = self._config.get_from_config_setting_cascade(
[('apis', 'oti_api_version'), ('apis', 'api_version')], "2")
self.use_v1 = (self._api_vers == "1")
self._node_search_prop = None
self._search_terms = None
self._tree_search_prop = None
self._study_search_prop = None
self.indexing_prefix = None
self.query_prefix = None
r = self._config.get_from_config_setting_cascade(
[('apis', 'oti_raw_urls'), ('apis', 'raw_urls')], "FALSE")
self._raw_urls = (r.lower() == 'true')
_WSWrapper.__init__(self, domain, **kwargs)
self.domain = domain
def __init__(self, domain, **kwargs):
self._prefix = None
_WSWrapper.__init__(self, domain, **kwargs)
self.domain = domain
self._github_oauth_token = None
self._get_from = kwargs.setdefault('get_from', 'external').lower()
self._transform = kwargs.setdefault('transform', 'client').lower()
self._refresh = kwargs.setdefault('refresh', 'never').lower()
self._src_code = _GET_FROM_VALUES.index(self._get_from)
self._refresh_code = _REFRESH_VALUES.index(self._refresh)
self._assumed_doc_version = None
self._locals_repo_dict = kwargs.get(
'locals_repos_dict'
) # repos_dict arg to Phylesystem() if get_from is local
self._store_config = None
self._docstore_obj = None
self._use_raw = False
def __init__(self, domain, **kwargs):
self._config = kwargs.get('config')
if self._config is None:
self._config = get_config_object()
self._current_synth_info = None
self._current_synth_id = None
self.prefix = None
r = self._config.get_from_config_setting_cascade([('apis', 'treemachine_raw_urls'),
('apis', 'raw_urls')],
"FALSE")
self._raw_urls = (r.lower() == 'true')
self._api_vers = self._config.get_from_config_setting_cascade([('apis', 'treemachine_api_version'),
('apis', 'api_version')],
"2")
self.use_v1 = (self._api_vers == "1")
_WSWrapper.__init__(self, domain, **kwargs)
self.domain = domain
def __init__(self, domain, **kwargs):
self._config = get_config_object(None, **kwargs)
self._api_vers = self._config.get_from_config_setting_cascade([('apis', 'oti_api_version'),
('apis', 'api_version')],
"2")
self.use_v1 = (self._api_vers == "1")
self._node_search_prop = None
self._search_terms = None
self._tree_search_prop = None
self._study_search_prop = None
self.indexing_prefix = None
self.query_prefix = None
r = self._config.get_from_config_setting_cascade([('apis', 'oti_raw_urls'),
('apis', 'raw_urls')],
"FALSE")
self._raw_urls = (r.lower() == 'true')
_WSWrapper.__init__(self, domain, **kwargs)
self.domain = domain
def __init__(self, domain, **kwargs):
_WSWrapper.__init__(self, domain, **kwargs)
def __init__(self, domain, **kwargs):
_WSWrapper.__init__(self, domain, **kwargs)
