def lint_conda_recipe(ctx, recipe_dir, **kwds):
info("Linting conda recipe %s" % recipe_dir)
lint_args, lint_ctx = setup_lint(ctx, **kwds)
def apply(f):
lint_ctx.lint(f.__name__, f, recipe_dir)
apply(lint_name)
apply(lint_version)
apply(lint_summary)
apply(lint_build_number)
apply(lint_directory_content)
apply(lint_license_family)
apply(lint_about_urls)
apply(lint_source)
apply(lint_fields)
apply(lint_requirements)
return handle_lint_complete(lint_ctx, lint_args)
def lint_conda_recipe(ctx, recipe_dir, **kwds):
info("Linting conda recipe %s" % recipe_dir)
lint_args, lint_ctx = setup_lint(ctx, **kwds)
def apply(f):
lint_ctx.lint(f.__name__, f, recipe_dir)
apply(lint_name)
apply(lint_version)
apply(lint_summary)
apply(lint_build_number)
apply(lint_directory_content)
apply(lint_license_family)
apply(lint_about_urls)
apply(lint_source)
apply(lint_fields)
apply(lint_requirements)
return handle_lint_complete(lint_ctx, lint_args)
def lint_repository(ctx, realized_repository, **kwds):
"""Lint a realized shed repository.
See :module:`planemo.shed` for details on constructing a realized
repository data structure.
"""
failed = False
path = realized_repository.real_path
info("Linting repository %s" % path)
lint_args, lint_ctx = setup_lint(ctx, **kwds)
lint_ctx.lint(
"lint_expansion",
lint_expansion,
realized_repository,
)
lint_ctx.lint(
"lint_expected_files",
lint_expected_files,
realized_repository,
)
lint_ctx.lint(
"lint_tool_dependencies_xsd",
lint_tool_dependencies_xsd,
realized_repository,
)
lint_ctx.lint(
"lint_tool_dependencies_sha256sum",
lint_tool_dependencies_sha256sum,
realized_repository,
)
lint_ctx.lint(
"lint_tool_dependencies_actions",
lint_tool_dependencies_actions,
realized_repository,
)
lint_ctx.lint(
"lint_repository_dependencies",
lint_repository_dependencies,
realized_repository,
)
lint_ctx.lint(
"lint_shed_yaml",
lint_shed_yaml,
realized_repository,
)
lint_ctx.lint(
"lint_readme",
lint_readme,
realized_repository,
)
if kwds["urls"]:
lint_ctx.lint(
"lint_urls",
lint_tool_dependencies_urls,
realized_repository,
)
if kwds["tools"]:
tools_failed = lint_repository_tools(ctx, realized_repository, lint_ctx, lint_args)
failed = failed or tools_failed
if kwds["ensure_metadata"]:
lint_ctx.lint(
"lint_shed_metadata",
lint_shed_metadata,
realized_repository,
)
return handle_lint_complete(lint_ctx, lint_args, failed=failed)
def lint_repository(ctx, realized_repository, **kwds):
"""Lint a realized shed repository.
See :mod:`planemo.shed` for details on constructing a realized
repository data structure.
"""
failed = False
path = realized_repository.real_path
info("Linting repository %s" % path)
lint_args, lint_ctx = setup_lint(ctx, **kwds)
lint_ctx.lint(
"lint_expansion",
lint_expansion,
realized_repository,
)
lint_ctx.lint(
"lint_expected_files",
lint_expected_files,
realized_repository,
)
lint_ctx.lint(
"lint_tool_dependencies_xsd",
lint_tool_dependencies_xsd,
realized_repository,
)
lint_ctx.lint(
"lint_tool_dependencies_sha256sum",
lint_tool_dependencies_sha256sum,
realized_repository,
)
lint_ctx.lint(
"lint_tool_dependencies_actions",
lint_tool_dependencies_actions,
realized_repository,
)
lint_ctx.lint(
"lint_repository_dependencies",
lint_repository_dependencies,
realized_repository,
)
lint_ctx.lint(
"lint_shed_yaml",
lint_shed_yaml,
realized_repository,
)
lint_ctx.lint(
"lint_readme",
lint_readme,
realized_repository,
)
if kwds["urls"]:
lint_ctx.lint(
"lint_urls",
lint_tool_dependencies_urls,
realized_repository,
)
if kwds["tools"]:
tools_failed = lint_repository_tools(ctx, realized_repository, lint_ctx, lint_args)
failed = failed or tools_failed
if kwds["ensure_metadata"]:
lint_ctx.lint(
"lint_shed_metadata",
lint_shed_metadata,
realized_repository,
)
return handle_lint_complete(lint_ctx, lint_args, failed=failed)
def lint_repository(ctx, realized_repository, **kwds):
"""Lint a realized shed repository.
See :module:`planemo.shed` for details on constructing a realized
repository data structure.
"""
# TODO: this really needs to start working with realized path.
failed = False
path = realized_repository.real_path
info("Linting repository %s" % path)
lint_args, lint_ctx = setup_lint(ctx, **kwds)
lint_ctx.lint(
"lint_expansion",
lint_expansion,
realized_repository,
)
lint_ctx.lint(
"lint_expected_files",
lint_expected_files,
realized_repository,
)
lint_ctx.lint(
"lint_tool_dependencies_xsd",
lint_tool_dependencies_xsd,
path,
)
lint_ctx.lint(
"lint_tool_dependencies_sha256sum",
lint_tool_dependencies_sha256sum,
path,
)
lint_ctx.lint(
"lint_tool_dependencies_actions",
lint_tool_dependencies_actions,
path,
)
lint_ctx.lint(
"lint_repository_dependencies",
lint_repository_dependencies,
path,
)
lint_ctx.lint(
"lint_shed_yaml",
lint_shed_yaml,
realized_repository,
)
lint_ctx.lint(
"lint_readme",
lint_readme,
path,
)
if kwds["urls"]:
lint_ctx.lint(
"lint_urls",
lint_tool_dependencies_urls,
path,
)
if kwds["tools"]:
for (tool_path, tool_source) in yield_tool_sources(ctx, path,
recursive=True):
info("+Linting tool %s" % tool_path)
if handle_tool_load_error(tool_path, tool_source):
failed = True
continue
lint_tool_source_with(
lint_ctx,
tool_source,
extra_modules=lint_args["extra_modules"]
)
if kwds["ensure_metadata"]:
lint_ctx.lint(
"lint_shed_metadata",
lint_shed_metadata,
realized_repository,
)
return handle_lint_complete(lint_ctx, lint_args, failed=failed)
def lint_repository(ctx, realized_repository, **kwds):
"""Lint a realized shed repository.
See :module:`planemo.shed` for details on constructing a realized
repository data structure.
"""
# TODO: this really needs to start working with realized path.
failed = False
path = realized_repository.real_path
info("Linting repository %s" % path)
lint_args, lint_ctx = setup_lint(ctx, **kwds)
lint_ctx.lint(
"lint_expansion",
lint_expansion,
realized_repository,
)
lint_ctx.lint(
"lint_expected_files",
lint_expected_files,
realized_repository,
)
lint_ctx.lint(
"lint_tool_dependencies_xsd",
lint_tool_dependencies_xsd,
path,
)
lint_ctx.lint(
"lint_tool_dependencies_sha256sum",
lint_tool_dependencies_sha256sum,
path,
)
lint_ctx.lint(
"lint_tool_dependencies_actions",
lint_tool_dependencies_actions,
path,
)
lint_ctx.lint(
"lint_repository_dependencies",
lint_repository_dependencies,
path,
)
lint_ctx.lint(
"lint_shed_yaml",
lint_shed_yaml,
realized_repository,
)
lint_ctx.lint(
"lint_readme",
lint_readme,
path,
)
if kwds["urls"]:
lint_ctx.lint(
"lint_urls",
lint_tool_dependencies_urls,
path,
)
if kwds["tools"]:
for (tool_path, tool_source) in yield_tool_sources(ctx,
path,
recursive=True):
info("+Linting tool %s" % tool_path)
if handle_tool_load_error(tool_path, tool_source):
failed = True
continue
lint_tool_source_with(lint_ctx,
tool_source,
extra_modules=lint_args["extra_modules"])
if kwds["ensure_metadata"]:
lint_ctx.lint(
"lint_shed_metadata",
lint_shed_metadata,
realized_repository,
)
return handle_lint_complete(lint_ctx, lint_args, failed=failed)