Python save_to_yaml Examples

Example #1

def test_save_to_yaml():
    """Test :func:`planemo.training.utils.save_to_yaml`."""
    metadata = load_yaml(metadata_fp)
    new_metadata_fp = "metadata.yaml"
    save_to_yaml(metadata, new_metadata_fp)
    assert os.path.exists(new_metadata_fp)
    os.remove(new_metadata_fp)

Example #2

File: test_training_utils.py Project: martenson/planemo

def test_save_to_yaml():
    """Test :func:`planemo.training.utils.save_to_yaml`."""
    metadata = load_yaml(metadata_fp)
    new_metadata_fp = "metadata.yaml"
    save_to_yaml(metadata, new_metadata_fp)
    assert os.path.exists(new_metadata_fp)
    os.remove(new_metadata_fp)

Example #3

File: test_training_tutorial.py Project: martin-raden/planemo

def test_tutorial_init_data_lib():
    """Test :func:`planemo.training.tutorial.tutorial.init_data_lib`."""
    tuto = Tutorial(training=training, topic=topic)
    tuto.init_data_lib()
    assert tuto.data_lib['destination']['type'] == 'library'
    assert tuto.data_lib['items'][0]['name'] == topic.title
    assert tuto.data_lib['items'][0]['items'][0]['name'] == tuto.title
    # from existing data library file
    os.makedirs(tuto.dir)
    tuto.data_lib = {}
    tuto.init_data_lib()
    assert tuto.data_lib['items'][0]['name'] == topic.title
    assert tuto.data_lib['items'][0]['items'][0]['name'] == tuto.title
    # other tutorial already there and add the new one
    tuto.data_lib['items'][0]['items'][0]['name'] = 'Different tutorial'
    save_to_yaml(tuto.data_lib, tuto.data_lib_fp)
    tuto.init_data_lib()
    assert tuto.data_lib['items'][0]['items'][0][
        'name'] == 'Different tutorial'
    assert tuto.data_lib['items'][0]['items'][1]['name'] == tuto.title
    shutil.rmtree("topics")

Example #4

File: test_training_tutorial.py Project: galaxyproject/planemo

def test_tutorial_init_data_lib():
    """Test :func:`planemo.training.tutorial.tutorial.init_data_lib`."""
    tuto = Tutorial(
        training=training,
        topic=topic)
    tuto.init_data_lib()
    assert tuto.data_lib['destination']['type'] == 'library'
    assert tuto.data_lib['items'][0]['name'] == topic.title
    assert tuto.data_lib['items'][0]['items'][0]['name'] == tuto.title
    # from existing data library file
    os.makedirs(tuto.dir)
    tuto.data_lib = {}
    tuto.init_data_lib()
    assert tuto.data_lib['items'][0]['name'] == topic.title
    assert tuto.data_lib['items'][0]['items'][0]['name'] == tuto.title
    # other tutorial already there and add the new one
    tuto.data_lib['items'][0]['items'][0]['name'] = 'Different tutorial'
    save_to_yaml(tuto.data_lib, tuto.data_lib_fp)
    tuto.init_data_lib()
    assert tuto.data_lib['items'][0]['items'][0]['name'] == 'Different tutorial'
    assert tuto.data_lib['items'][0]['items'][1]['name'] == tuto.title
    shutil.rmtree("topics")