def test_generate_tuto_from_wf():
"""Test :func:`planemo.training.generate_tuto_from_wf`."""
train = Training(KWDS)
train.kwds['tutorial_name'] = None
train.kwds['slides'] = False
train.init_training(CTX)
train.kwds['tutorial_name'] = 'existing_tutorial'
create_existing_tutorial('existing_tutorial', tuto_fp, train.topic)
# no workflow
train.kwds['workflow'] = None
exp_exception = "A path to a local workflow or the id of a workflow on a running Galaxy instance should be provided"
with assert_raises_regexp(Exception, exp_exception):
train.generate_tuto_from_wf(CTX)
# with workflow
train.kwds['workflow'] = WF_FP
train.generate_tuto_from_wf(CTX)
assert '**FastQC** {% icon tool %} with the following parameters:' in open(train.tuto.tuto_fp, 'r').read()
assert os.path.exists(train.tuto.wf_fp)
# clean after
shutil.rmtree(train.topics_dir)
shutil.rmtree("metadata")
def test_generate_tuto_from_wf():
"""Test :func:`planemo.training.generate_tuto_from_wf`."""
train = Training(KWDS)
train.kwds['tutorial_name'] = None
train.kwds['slides'] = False
train.init_training(CTX)
train.kwds['tutorial_name'] = 'existing_tutorial'
create_existing_tutorial('existing_tutorial', tuto_fp, train.topic)
# no workflow
train.kwds['workflow'] = None
exp_exception = "A path to a local workflow or the id of a workflow on a running Galaxy instance should be provided"
with assert_raises_regexp(Exception, exp_exception):
train.generate_tuto_from_wf(CTX)
# with workflow
train.kwds['workflow'] = WF_FP
train.generate_tuto_from_wf(CTX)
assert_file_contains(
train.tuto.tuto_fp,
"{% tool [FastQC](toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.71) %} with the following parameters:",
)
assert os.path.exists(train.tuto.wf_fp)
# clean after
shutil.rmtree(train.topics_dir)
shutil.rmtree("metadata")
def cli(ctx, uris, **kwds):
"""Create tutorial skeleton from workflow."""
kwds["no_dependency_resolution"] = True
training = Training(kwds)
training.generate_tuto_from_wf(ctx)
