Python MappingFunctions Examples

Example #1

File: releasebeadstest.py Project: REC17/Polonator

import time
import sys
import os
sys.path.append(os.environ['POLONATOR_PATH']+'/polonator')  
  
import numpy as np
# from PIL import Image
import Image # for later versions of PIL
import polonator.image.findObjects as FO
from polonator.illum.mapping import MappingFunctions
from polonator.motion.maestro import MaestroFunctions
import polonator.camera.asPhoenix as PC
import polonator.illum.D4000 as PI

MapFunc = MappingFunctions()
MapFunc.read_mapping_file()

MaestroF = MaestroFunctions()

#my_color = "spare"
my_color = "cy3"
LEN = 1000000
data_size = LEN#+4
MAX_BEADS_PERFRAME = 1000000

img_array = np.empty(data_size, dtype=np.uint16)
img_array2 = np.empty(data_size, dtype=np.uint16)
beadpos_xcol = np.empty(MAX_BEADS_PERFRAME, dtype=np.uint16)
beadpos_yrow = np.empty(MAX_BEADS_PERFRAME, dtype=np.uint16)
segmask_image =  np.empty(data_size, dtype=np.uint16)

Example #2

File: findBeadsTest.py Project: REC17/Polonator

import time
import sys
import os
sys.path.append(os.environ['POLONATOR_PATH']+'/polonator')  
  
import numpy as np
# from PIL import Image
import Image # for later versions of PIL
import polonator.image.findObjects as FO
from polonator.illum.mapping import MappingFunctions
from polonator.motion.maestro import MaestroFunctions
import polonator.camera.asPhoenix as PC
import polonator.image.imgTools as IT

# assumes we've alreay created a mapping file
MapFunc = MappingFunctions()
MapFunc.readMappingFile()

MaestroF = MaestroFunctions()

#my_color = "spare"
#my_color = "txred"
#my_color_ind = 2
my_color = "cy3"
my_color_ind = 0
no_color = "none"

color0 = "cy3"
color1 = "cy5"
color2 = "txred"
color3 = "fam"

Example #3

File: findBeadsTest.py Project: chaoli238/Polonator

import time
import sys
import os
sys.path.append(os.environ['POLONATOR_PATH'] + '/polonator')  
  
import numpy as np
# from PIL import Image
import Image # for later versions of PIL
import polonator.image.findObjects as FO
from polonator.illum.mapping import MappingFunctions
from polonator.motion.maestro import MaestroFunctions
import polonator.camera.asPhoenix as PC
import polonator.image.imgTools as IT

# assumes we've alreay created a mapping file
MapFunc = MappingFunctions()
MapFunc.readMappingFile(useDefault=True)

MaestroF = MaestroFunctions()

#my_color = "spare"
#my_color = "txr"
#my_color_ind = 2
my_color = "cy3"
my_color_ind = 0
no_color = "none"

color0 = "cy3"
color1 = "cy5"
color2 = "txr"
color3 = "fam"