Example #1
0
def computeLocalPval(x,i):
    wins=np.array([200])*1000
    df=[]
    for i in X.index:
        res=[]
        for pad in wins:
            x=X[(X.index>=i-pad) & (X.index<=i+pad)]
            kde=utl.getDensity(x[x.index != i])
            res+=[utl.getPvalKDE(pd.Series(x.loc[i]),kde)[0]]
        df+=[pd.Series(res,index=wins,name=i)]
    df=pd.DataFrame(df)
    pd.concat([df.apply(lambda x:x.idxmax(),1),df.max(1)],1).plot.scatter(x=0,y=1)
    a['pval']=df.max(1).values
    o=a[a.pval>a.pval.quantile(0.999)]

    pplt.Manhattan(a,Outliers=o)

    df.max(1).plot()

    y=utl.scan3way(x,winsize=10,f=np.mean)
    x.sort_values()
    y.sort_values()