def test_ARY015(self):
aa = ArrayAnalyse('ARY015')
aa.strict = False
aa.load_image(self.cases / 'ARY015.tif')
aa.finalize_collection()
self.assertAlmostEqual(0.2759596293934661,
aa.evaluate('A1', just_value=True,
norm='raw')[0][0],
delta=1E-13)
self.assertAlmostEqual(0.18749890601518324,
aa.evaluate('E13', just_value=True,
norm='raw')[0][0],
delta=1E-13)
def test_ARY028(self):
aa = ArrayAnalyse('ARY028')
aa.strict = False
aa.load_image(self.cases / 'ARY028.tif')
aa.finalize_collection()
self.assertAlmostEqual(0.5281856065937371,
aa.evaluate('A1', just_value=True,
norm='raw')[0][0],
delta=1E-13)
self.assertAlmostEqual(0.05475981244045449,
aa.evaluate('E13', just_value=True,
norm='raw')[0][0],
delta=1E-13)
def test_ARY007(self):
aa = ArrayAnalyse('ARY007')
aa.strict = False
aa.load_image(self.cases / 'ARY007.tif')
aa.finalize_collection()
self.assertAlmostEqual(0.5117877836372805,
aa.evaluate('A1', just_value=True,
norm='raw')[0][0],
delta=1E-13)
self.assertAlmostEqual(0.06156276344709296,
aa.evaluate('E13', just_value=True,
norm='raw')[0][0],
delta=1E-13)
def setUpClass(cls):
cls.cases = Path(__file__).absolute().resolve().parent / 'cases'
cls.aa = ArrayAnalyse.load(cls.cases / 'save' / 'dump_0_3_0.tar')
cls.out_folder = cls.cases / 'testing_reports'
cls.out_folder.mkdir(exist_ok=True, parents=True)
cls.additional_info = [
dict(key='system_name', name='System name', value='UnitTest'),
dict(key='membrane_name', name='Membrane name', value='Membrane A')
]
def test_modify_exposure_t(self):
aa = ArrayAnalyse.load(self.cases / 'save' / 'dump_0_3_0.tar')
exposure, reorder = aa.modify_exposure({
'start': 10,
'step': 30
},
test=True)
self.assertFalse(reorder)
self.assertListEqual(exposure, [10, 40, 70, 100, 130])
def test_save_load(self):
save_mem = io.BytesIO()
self.aa.save(file=save_mem)
save_mem_hash = hash_mem(save_mem, skip=0)
save_mem.seek(0)
saved_aa = ArrayAnalyse.load(save_mem)
np.testing.assert_array_equal(saved_aa.original_index,
self.aa.original_index)
np.testing.assert_array_equal(saved_aa.exposure, self.aa.exposure)
np.testing.assert_array_equal(saved_aa.raw_images, self.aa.raw_images)
del saved_aa
self.aa.save(self.out_folder / 'dump.tar')
save_file_hash = hash_file(self.out_folder / 'dump.tar', skip=0)
self.assertEqual(save_file_hash, save_mem_hash)
def setUpClass(cls):
cls.aa = ArrayAnalyse('ARY022B')
cls.cases = Path(__file__).absolute().resolve().parent / 'cases'
cls.out_folder = cls.cases / 'testing_collection'
cls.out_folder.mkdir(exist_ok=True, parents=True)
cls.aa.load_collection(cls.cases / 'prepared', rotation=90)
cls.compare_raw_bg = {
'position': (0, 0),
'info': ['Reference Spots', 'N/A', 'RS'],
'value': [
0.02435921, 0.02744768, 0.03043349, 0.03340112, 0.0363117,
0.03901506, 0.04165865, 0.04422421, 0.04678247, 0.04915831,
0.05159785, 0.05389296, 0.05621142, 0.05833439, 0.06049102,
0.06279641, 0.06493878, 0.06679878, 0.06875748, 0.07078687,
0.07264834, 0.07467496, 0.07659154, 0.07851298, 0.0802008,
0.08157714, 0.08358657
]
}
def test_modify_exposure_mix(self):
aa = ArrayAnalyse.load(self.cases / 'save' / 'dump_0_3_0.tar')
exposure, reorder = aa.modify_exposure([10, 40, 100, 70, 130])
self.assertTrue(reorder)
np.testing.assert_array_equal(aa.raw_index, [0, 1, 3, 2, 4])
def setUpClass(cls):
cls.aa = ArrayAnalyse('ARY022B')
cls.cases = Path(__file__).absolute().resolve().parent / 'cases'