msg( "Unknown format %s." % format ) sys.exit(1) # make sure it exists if not os.path.exists( inputFilename ): msg( "Can't find (or access) file '%s'" % inputFilename ) sys.exit(1) if len(sys.argv) == 4: outFilename = sys.argv[3] else: outFilename = misc.MakeFilename(inputFilename, '.'+format) return format,inputFilename,outFilename if __name__ == '__main__': setPrescriptDir() (format,inputFilename,outFilename) = checkParams(sys.argv) # Real work begins frags = io.readFragments(inputFilename) document = process.assembleDocument( frags ) # del frags # Uncomment this if you are low on memory process.preprocessDocument( document ) predict.predictDocument( document ) if format == 'arff': io.applyHandcheck( inputFilename, document ) io.renderDocument( makeFormatter(outFilename, format), document )
def asdoc(): global frags, document document = process.assembleDocument(frags)