Python BelProcessor.get_activity_activity Examples

Example #1

File: bel_api.py Project: gberriz/indra

def process_belrdf(rdf_str):
    # Parse the RDF
    g = rdflib.Graph()
    g.parse(data=rdf_str, format='nt')
    # Build BelPy statements from RDF
    bp = BelProcessor(g)
    bp.get_complexes()
    bp.get_activating_subs()
    bp.get_modifications()
    bp.get_dephosphorylations()
    bp.get_activating_mods()
    bp.get_composite_activating_mods()
    bp.get_activity_activity()

    # Print some output about the process
    bp.print_statement_coverage()
    print "\n--- Converted BelPy Statements -------------"
    bp.print_statements()
    return bp

Example #2

def process_belrdf(rdf_filename):
    # Parse the RDF
    g = rdflib.Graph()
    g.parse(rdf_filename, format='nt')
    # Build BelPy statements from RDF
    bp = BelProcessor(g)
    bp.get_complexes()
    bp.get_activating_subs()
    bp.get_modifications()
    bp.get_dephosphorylations()
    bp.get_activating_mods()
    bp.get_composite_activating_mods()
    bp.get_activity_activity()

    # Print some output about the process
    bp.print_statement_coverage()
    print "\n--- Converted BelPy Statements -------------"
    bp.print_statements()
    return bp