def test_creates_link_with_trial(self, conn):
document = {
'id': '5b99281096b311e6a0ecf8165487599c',
'trial_id': '7b77a80a8e0541aa92a02ef27d45a0ac',
'name': 'name',
'type': 'csr',
}
writers.write_document(conn, document)
assert conn['database']['trials_documents'].find_one(
trial_id=document['trial_id'],
document_id=document['id']
)
def test_updates_documents_with_same_type_and_url(self, conn):
document_id = '5b99281096b311e6a0ecf8165487599c'
document = {
'id': document_id,
'name': 'name',
'type': 'csr',
'source_url': 'http://example.org',
}
writers.write_document(conn, document)
del document['id']
new_document_id = writers.write_document(conn, document)
assert new_document_id == document_id
def test_updates_documents_with_same_type_and_file_id(self, conn):
document_id = '5b99281096b311e6a0ecf8165487599c'
document = {
'id': document_id,
'name': 'name',
'type': 'csr',
'file_id': '7e7bee65ba2b4adba3657d88ad1afc3f',
}
writers.write_document(conn, document)
del document['id']
new_document_id = writers.write_document(conn, document)
assert new_document_id == document_id
def test_updates_fda_documents(self, conn):
document_id = '5b99281096b311e6a0ecf8165487599c'
document = {
'id': document_id,
'name': 'name',
'type': 'csr',
'file_id': '7e7bee65ba2b4adba3657d88ad1afc3f',
'fda_approval_id': 'd263061170d84b41bcebfb03582e84b9',
}
writers.write_document(conn, document)
del document['id']
new_document_id = writers.write_document(conn, document)
assert new_document_id == document_id
def test_updates_documents_with_same_type_and_url(self, conn, document_category):
document_id = '5b99281096b311e6a0ecf8165487599c'
document = {
'id': document_id,
'name': 'name',
'source_url': 'http://example.org',
'document_category_id': document_category,
}
writers.write_document(conn, document)
del document['id']
new_document_id = writers.write_document(conn, document)
assert uuid.UUID(new_document_id).hex == document_id
def test_updates_documents_with_same_type_and_file_id(self, conn, file_fixture, document_category):
document_id = '5b99281096b311e6a0ecf8165487599c'
document = {
'id': document_id,
'name': 'name',
'file_id': file_fixture,
'document_category_id': document_category,
}
writers.write_document(conn, document)
del document['id']
new_document_id = writers.write_document(conn, document)
assert uuid.UUID(new_document_id).hex == document_id
def test_updates_fda_documents(self, conn, file_fixture, fda_approval, document_category):
document_id = '5b99281096b311e6a0ecf8165487599c'
document = {
'id': document_id,
'name': 'name',
'file_id': file_fixture,
'fda_approval_id': fda_approval,
'document_category_id': document_category,
}
writers.write_document(conn, document)
del document['id']
new_document_id = writers.write_document(conn, document)
assert uuid.UUID(new_document_id).hex == document_id
def test_creates_link_with_trial(self, conn, trial, document_category):
document = {
'id': '5b99281096b311e6a0ecf8165487599c',
'trial_id': trial,
'source_url': 'http://example.com',
'name': 'name',
'document_category_id': document_category,
}
writers.write_document(conn, document)
assert conn['database']['trials_documents'].find_one(
trial_id=document['trial_id'],
document_id=document['id']
)
def test_skips_document_with_invalid_url(self, conn):
document = {
'name': 'name',
'type': 'type',
'source_url': 'url',
}
assert writers.write_document(conn, document) is None
def test_writes_url_only_document(self, conn):
document = {
'name': 'name',
'type': 'type',
'source_url': 'https://clinicaltrials.gov/ct2/show/results/NCT00486265',
}
assert writers.write_document(conn, document) is not None
def test_writes_file_only_document(self, conn):
document = {
'name': 'name',
'type': 'csr',
'file_id': '7e7bee65ba2b4adba3657d88ad1afc3f',
}
assert writers.write_document(conn, document) is not None
def test_skips_document_with_invalid_url(self, conn, document_category):
document = {
'name': 'name',
'source_url': 'url',
'document_category_id': document_category,
}
assert writers.write_document(conn, document) is None
def test_writes_url_only_document(self, conn, document_category):
document = {
'name': 'name',
'source_url': 'https://clinicaltrials.gov/ct2/show/results/NCT00486265',
'document_category_id': document_category,
}
assert writers.write_document(conn, document) is not None
def test_writes_file_only_document(self, conn, file_fixture, document_category):
document = {
'name': 'name',
'file_id': file_fixture,
'document_category_id': document_category,
}
assert writers.write_document(conn, document) is not None
def test_returns_the_document_id(self, conn, document_category):
document = {
'name': 'name',
'source_url': 'https://clinicaltrials.gov/ct2/show/results/NCT00486265',
'document_category_id': document_category,
}
document_id = writers.write_document(conn, document)
assert conn['database']['documents'].find_one(id=document_id)
def test_returns_the_document_id(self, conn):
document = {
'name': 'name',
'type': 'csr',
'file_id': '7e7bee65ba2b4adba3657d88ad1afc3f',
'source_url': 'https://clinicaltrials.gov/ct2/show/results/NCT00486265',
}
document_id = writers.write_document(conn, document)
assert conn['database']['documents'].find_one(id=document_id)
def test_updates_existing_document_by_id(self, conn):
original_document = {
'id': '5b99281096b311e6a0ecf8165487599c',
'name': 'name',
'type': 'csr',
'source_url': 'http://example.org',
}
new_document = {
'id': original_document['id'],
'name': 'new name',
'type': 'results',
}
table = conn['database']['documents']
table.insert(original_document)
writers.write_document(conn, new_document)
document = table.find_one(id=original_document['id'])
assert document['name'] == new_document['name']
assert document['type'] == new_document['type']
def test_updates_existing_document_by_id(self, conn, document_category):
original_document = {
'id': '5b99281096b311e6a0ecf8165487599c',
'name': 'name',
'source_url': 'http://example.org',
'document_category_id': document_category,
}
new_document = {
'id': original_document['id'],
'name': 'new name',
'source_url': 'http://example.net',
'document_category_id': document_category,
}
table = conn['database']['documents']
table.insert(original_document)
writers.write_document(conn, new_document)
document = table.find_one(id=original_document['id'])
assert document['name'] == new_document['name']
assert document['source_url'] == new_document['source_url']